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@LewisLabUCSD

Lewis Lab of Systems Biology & Cell Engineering at UCSD

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  1. Ligand-Receptor-Pairs Ligand-Receptor-Pairs Public

    Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.

    119 33

  2. NGS-Pipeline NGS-Pipeline Public

    All kinds of NGS analysis pipeline

    Python 12 3

  3. PinAPL-Py PinAPL-Py Public

    A no hassle tool for analyzing your favorite CRISPR screen dataset!

    Python 11 10

  4. CellFie CellFie Public

    An alternative approach to capture the breadth of cellular functions by performing a functional analysis of existing biological networks.

    MATLAB 11 5

  5. MammalianSecretoryRecon MammalianSecretoryRecon Public

    Secretory Pathway Reconstruction for Human, CHO, and Mouse

    Jupyter Notebook 10 9

  6. GlyCompare GlyCompare Public

    Comparing glycoprofiles, leveraging motif substructure arithmetic

    Jupyter Notebook 9 2

Repositories

Showing 10 of 39 repositories
  • COSMIC-dFBA Public

    Public code for COSMIC dFBA

    LewisLabUCSD/COSMIC-dFBA’s past year of commit activity
    MATLAB 0 CC0-1.0 0 0 0 Updated Apr 6, 2024
  • N-Glycosylation-Markov-Models Public

    Cleaned-up Version

    LewisLabUCSD/N-Glycosylation-Markov-Models’s past year of commit activity
    MATLAB 0 0 0 0 Updated Dec 21, 2023
  • iLipidome-website Public
    LewisLabUCSD/iLipidome-website’s past year of commit activity
    R 0 0 0 0 Updated Jul 27, 2023
  • iLipidome Public

    iLipidome is a novel lipidomic data analysis framework.

    LewisLabUCSD/iLipidome’s past year of commit activity
    R 1 0 0 0 Updated Jul 21, 2023
  • iLipidome-package Public
    LewisLabUCSD/iLipidome-package’s past year of commit activity
    HTML 0 0 0 0 Updated Jul 21, 2023
  • CHO96 Public

    Code accompanying manuscript: "Deciphering the determinants of recombinant protein yield across the human secretome"

    LewisLabUCSD/CHO96’s past year of commit activity
    HTML 0 1 0 0 Updated May 25, 2023
  • secCellFie Public

    Expanding the CellFie tool to include the secretory pathway

    LewisLabUCSD/secCellFie’s past year of commit activity
    HTML 3 0 0 0 Updated Apr 13, 2023
  • Mito_Trace Public

    Tracking cell-lineage using mutations in the mitochondrion genome.

    LewisLabUCSD/Mito_Trace’s past year of commit activity
    Jupyter Notebook 0 0 21 (1 issue needs help) 0 Updated Mar 16, 2023
  • GlyCompare Public

    Comparing glycoprofiles, leveraging motif substructure arithmetic

    LewisLabUCSD/GlyCompare’s past year of commit activity
    Jupyter Notebook 9 MIT 2 4 1 Updated Jan 29, 2023
  • GlyCompareCT Public

    glyCompare command line tool

    LewisLabUCSD/GlyCompareCT’s past year of commit activity
    Python 3 1 1 0 Updated Jan 29, 2023
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