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update config test
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LiaOb21 committed May 15, 2024
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2 changes: 1 addition & 1 deletion config/config_test.yaml
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Expand Up @@ -57,7 +57,7 @@ hifiasm:
optional_params:
"-f": "0" # used for small datasets
"-l": "" # purge level. 0: no purging; 1: light; 2/3: aggressive [0 for trio; 3 for unzip]
"--ul": "" # use this if you have also ont data you want to integrate in your assembly
"--ul": "test_data/raw_ont/ont_test_SPSC01_SRR27947616_PRJNA1075684.fastq.gz" # use this if you have also ont data you want to integrate in your assembly

#Set this to False if you want to skip the fcsgx step:
include_fcsgx: True #inlcude this rule only if you have previously downloaded the database (recommended to run fcsgx only on a HPC. It requires around 500 GB of space on your disk and a large RAM)
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