diff --git a/config/config_test.yaml b/config/config_test.yaml index 46e5542..e40f89f 100644 --- a/config/config_test.yaml +++ b/config/config_test.yaml @@ -57,7 +57,7 @@ hifiasm: optional_params: "-f": "0" # used for small datasets "-l": "" # purge level. 0: no purging; 1: light; 2/3: aggressive [0 for trio; 3 for unzip] - "--ul": "" # use this if you have also ont data you want to integrate in your assembly + "--ul": "test_data/raw_ont/ont_test_SPSC01_SRR27947616_PRJNA1075684.fastq.gz" # use this if you have also ont data you want to integrate in your assembly #Set this to False if you want to skip the fcsgx step: include_fcsgx: True #inlcude this rule only if you have previously downloaded the database (recommended to run fcsgx only on a HPC. It requires around 500 GB of space on your disk and a large RAM)