adding input bwa index

LiaOb21 · Jan 4, 2024 · 5f23fc7 · 5f23fc7
1 parent e5d9036
commit 5f23fc7
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/workflow/rules/bwa_mem.smk b/workflow/rules/bwa_mem.smk
@@ -6,6 +6,7 @@
 rule bwa_mem:
     input:
         REF = "results/purge_dups/hifiasm_p_purged.fa",
+        index = rules.bwa_index.output[0],
         forward_hic = "results/fastp/{sample}_trim_1.fastq.gz",
         reverse_hic = "results/fastp/{sample}_trim_2.fastq.gz"
     output: