setting up github actions

LiaOb21 · May 15, 2024 · 8d14022 · 8d14022
1 parent af9dc48
commit 8d14022
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -27,7 +27,7 @@ jobs:
     - name: Lint workflow
       uses: snakemake/snakemake-github-action@v1.24.0
       with:
-        directory: .test
+        directory: .
         snakefile: workflow/Snakefile
         args: "--lint --configfile config/config_test.yaml"
 
@@ -64,13 +64,13 @@ jobs:
     - name: Test workflow
       uses: snakemake/snakemake-github-action@v1.24.0
       with:
-        directory: .test
+        directory: .
         snakefile: workflow/Snakefile
         args: "--configfile config/config_test.yaml --use-conda --show-failed-logs --cores 3 --conda-cleanup-pkgs cache --all-temp"
 
     - name: Test report
       uses: snakemake/snakemake-github-action@v1.24.0
       with:
-        directory: .test
+        directory: .
         snakefile: workflow/Snakefile
         args: "--report report.zip"