From 8d14022ff9223743df28abb40744be1fc803a34c Mon Sep 17 00:00:00 2001 From: LiaOb21 Date: Wed, 15 May 2024 08:24:44 +0100 Subject: [PATCH] setting up github actions --- .github/workflows/main.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index ac4e7d1..435d7a6 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -27,7 +27,7 @@ jobs: - name: Lint workflow uses: snakemake/snakemake-github-action@v1.24.0 with: - directory: .test + directory: . snakefile: workflow/Snakefile args: "--lint --configfile config/config_test.yaml" @@ -64,13 +64,13 @@ jobs: - name: Test workflow uses: snakemake/snakemake-github-action@v1.24.0 with: - directory: .test + directory: . snakefile: workflow/Snakefile args: "--configfile config/config_test.yaml --use-conda --show-failed-logs --cores 3 --conda-cleanup-pkgs cache --all-temp" - name: Test report uses: snakemake/snakemake-github-action@v1.24.0 with: - directory: .test + directory: . snakefile: workflow/Snakefile args: "--report report.zip" \ No newline at end of file