making plastid optional

LiaOb21 · Feb 22, 2024 · 9d77c90 · 9d77c90
1 parent c887014
commit 9d77c90
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -55,7 +55,7 @@ rule all:
         "results/kmc/out.hist",  # output of kmc rule
         "results/genomescope",  # output directory of genomescope
         "results/oatk/oatk.asm.mito.ctg.fasta",  # mitochondrion fasta from oatk
-        "results/oatk/oatk.asm.pltd.ctg.fasta",  # chloroplast fasta from oatk
+        #"results/oatk/oatk.asm.pltd.ctg.fasta",  # chloroplast fasta from oatk
         "results/hifiasm/hifiasm.asm.p_ctg.gfa",  # draft hifiasm assembly.gfa
         "results/hifiasm/hifiasm.asm.p_ctg.fa",  # draft hifiasm assembly.fa
         "results/purge_dups/hifiasm_p_purged.fa",  # purged assembly with purge_dups