From 9d77c90958a9373983397f20d2b56a83ab11686a Mon Sep 17 00:00:00 2001 From: LiaOb21 Date: Thu, 22 Feb 2024 12:41:41 +0000 Subject: [PATCH] making plastid optional --- workflow/Snakefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/Snakefile b/workflow/Snakefile index 535fcc8..4cdce6d 100644 --- a/workflow/Snakefile +++ b/workflow/Snakefile @@ -55,7 +55,7 @@ rule all: "results/kmc/out.hist", # output of kmc rule "results/genomescope", # output directory of genomescope "results/oatk/oatk.asm.mito.ctg.fasta", # mitochondrion fasta from oatk - "results/oatk/oatk.asm.pltd.ctg.fasta", # chloroplast fasta from oatk + #"results/oatk/oatk.asm.pltd.ctg.fasta", # chloroplast fasta from oatk "results/hifiasm/hifiasm.asm.p_ctg.gfa", # draft hifiasm assembly.gfa "results/hifiasm/hifiasm.asm.p_ctg.fa", # draft hifiasm assembly.fa "results/purge_dups/hifiasm_p_purged.fa", # purged assembly with purge_dups