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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,94 @@ | ||
| name: arima_pipeline | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - defaults | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=conda_forge | ||
| - _openmp_mutex=4.5=2_gnu | ||
| - alsa-lib=1.2.11=hd590300_1 | ||
| - bwa=0.7.17=he4a0461_11 | ||
| - bzip2=1.0.8=hd590300_5 | ||
| - c-ares=1.28.1=hd590300_0 | ||
| - ca-certificates=2024.2.2=hbcca054_0 | ||
| - cairo=1.18.0=h3faef2a_0 | ||
| - expat=2.6.2=h59595ed_0 | ||
| - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 | ||
| - font-ttf-inconsolata=3.000=h77eed37_0 | ||
| - font-ttf-source-code-pro=2.038=h77eed37_0 | ||
| - font-ttf-ubuntu=0.83=h77eed37_1 | ||
| - fontconfig=2.14.2=h14ed4e7_0 | ||
| - fonts-conda-ecosystem=1=0 | ||
| - fonts-conda-forge=1=0 | ||
| - freetype=2.12.1=h267a509_2 | ||
| - giflib=5.2.2=hd590300_0 | ||
| - graphite2=1.3.13=h59595ed_1003 | ||
| - harfbuzz=8.3.0=h3d44ed6_0 | ||
| - htslib=1.19.1=h81da01d_2 | ||
| - icu=73.2=h59595ed_0 | ||
| - keyutils=1.6.1=h166bdaf_0 | ||
| - krb5=1.21.2=h659d440_0 | ||
| - lcms2=2.15=h7f713cb_2 | ||
| - ld_impl_linux-64=2.40=h41732ed_0 | ||
| - lerc=4.0.0=h27087fc_0 | ||
| - libcups=2.3.3=h4637d8d_4 | ||
| - libcurl=8.7.1=hca28451_0 | ||
| - libdeflate=1.18=h0b41bf4_0 | ||
| - libedit=3.1.20191231=he28a2e2_2 | ||
| - libev=4.33=hd590300_2 | ||
| - libexpat=2.6.2=h59595ed_0 | ||
| - libffi=3.4.2=h7f98852_5 | ||
| - libgcc-ng=13.2.0=h807b86a_5 | ||
| - libglib=2.80.0=hf2295e7_4 | ||
| - libgomp=13.2.0=h807b86a_5 | ||
| - libiconv=1.17=hd590300_2 | ||
| - libjpeg-turbo=2.1.5.1=hd590300_1 | ||
| - libnghttp2=1.58.0=h47da74e_1 | ||
| - libnsl=2.0.1=hd590300_0 | ||
| - libpng=1.6.43=h2797004_0 | ||
| - libsqlite=3.45.2=h2797004_0 | ||
| - libssh2=1.11.0=h0841786_0 | ||
| - libstdcxx-ng=13.2.0=h7e041cc_5 | ||
| - libtiff=4.6.0=h8b53f26_0 | ||
| - libuuid=2.38.1=h0b41bf4_0 | ||
| - libwebp-base=1.3.2=hd590300_1 | ||
| - libxcb=1.15=h0b41bf4_0 | ||
| - libxcrypt=4.4.36=hd590300_1 | ||
| - libzlib=1.2.13=hd590300_5 | ||
| - ncurses=6.4.20240210=h59595ed_0 | ||
| - openjdk=20.0.2=hfea2f88_1 | ||
| - openssl=3.2.1=hd590300_1 | ||
| - pcre2=10.43=hcad00b1_0 | ||
| - perl=5.32.1=7_hd590300_perl5 | ||
| - picard=2.18.7=2 | ||
| - pip=24.0=pyhd8ed1ab_0 | ||
| - pixman=0.43.2=h59595ed_0 | ||
| - pthread-stubs=0.4=h36c2ea0_1001 | ||
| - python=3.12.2=hab00c5b_0_cpython | ||
| - readline=8.2=h8228510_1 | ||
| - samtools=1.19.2=h50ea8bc_1 | ||
| - setuptools=69.2.0=pyhd8ed1ab_0 | ||
| - tk=8.6.13=noxft_h4845f30_101 | ||
| - tzdata=2024a=h0c530f3_0 | ||
| - wheel=0.43.0=pyhd8ed1ab_1 | ||
| - xorg-fixesproto=5.0=h7f98852_1002 | ||
| - xorg-inputproto=2.3.2=h7f98852_1002 | ||
| - xorg-kbproto=1.0.7=h7f98852_1002 | ||
| - xorg-libice=1.1.1=hd590300_0 | ||
| - xorg-libsm=1.2.4=h7391055_0 | ||
| - xorg-libx11=1.8.9=h8ee46fc_0 | ||
| - xorg-libxau=1.0.11=hd590300_0 | ||
| - xorg-libxdmcp=1.1.3=h7f98852_0 | ||
| - xorg-libxext=1.3.4=h0b41bf4_2 | ||
| - xorg-libxfixes=5.0.3=h7f98852_1004 | ||
| - xorg-libxi=1.7.10=h7f98852_0 | ||
| - xorg-libxrender=0.9.11=hd590300_0 | ||
| - xorg-libxt=1.3.0=hd590300_1 | ||
| - xorg-libxtst=1.2.3=h7f98852_1002 | ||
| - xorg-recordproto=1.14.2=h7f98852_1002 | ||
| - xorg-renderproto=0.11.1=h7f98852_1002 | ||
| - xorg-xextproto=7.3.0=h0b41bf4_1003 | ||
| - xorg-xproto=7.0.31=h7f98852_1007 | ||
| - xz=5.2.6=h166bdaf_0 | ||
| - zlib=1.2.13=hd590300_5 | ||
| - zstd=1.5.5=hfc55251_0 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,138 @@ | ||
| name: bandage | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - defaults | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=conda_forge | ||
| - _openmp_mutex=4.5=2_gnu | ||
| - alsa-lib=1.2.11=hd590300_1 | ||
| - attr=2.5.1=h166bdaf_1 | ||
| - bandage=0.8.1=hc9558a2_2 | ||
| - bzip2=1.0.8=hd590300_5 | ||
| - ca-certificates=2024.2.2=hbcca054_0 | ||
| - cairo=1.18.0=h3faef2a_0 | ||
| - dbus=1.13.6=h5008d03_3 | ||
| - expat=2.6.2=h59595ed_0 | ||
| - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 | ||
| - font-ttf-inconsolata=3.000=h77eed37_0 | ||
| - font-ttf-source-code-pro=2.038=h77eed37_0 | ||
| - font-ttf-ubuntu=0.83=h77eed37_1 | ||
| - fontconfig=2.14.2=h14ed4e7_0 | ||
| - fonts-conda-ecosystem=1=0 | ||
| - fonts-conda-forge=1=0 | ||
| - freetype=2.12.1=h267a509_2 | ||
| - gettext=0.22.5=h59595ed_2 | ||
| - gettext-tools=0.22.5=h59595ed_2 | ||
| - giflib=5.2.2=hd590300_0 | ||
| - glib=2.80.0=hf2295e7_4 | ||
| - glib-tools=2.80.0=hde27a5a_4 | ||
| - graphite2=1.3.13=h59595ed_1003 | ||
| - gst-plugins-base=1.22.9=hfa15dee_1 | ||
| - gstreamer=1.22.9=h98fc4e7_1 | ||
| - harfbuzz=8.3.0=h3d44ed6_0 | ||
| - icu=73.2=h59595ed_0 | ||
| - keyutils=1.6.1=h166bdaf_0 | ||
| - krb5=1.21.2=h659d440_0 | ||
| - lame=3.100=h166bdaf_1003 | ||
| - ld_impl_linux-64=2.40=h41732ed_0 | ||
| - lerc=4.0.0=h27087fc_0 | ||
| - libasprintf=0.22.5=h661eb56_2 | ||
| - libasprintf-devel=0.22.5=h661eb56_2 | ||
| - libcap=2.69=h0f662aa_0 | ||
| - libclang-cpp15=15.0.7=default_h127d8a8_5 | ||
| - libclang13=18.1.3=default_h5d6823c_0 | ||
| - libcups=2.3.3=h4637d8d_4 | ||
| - libdeflate=1.20=hd590300_0 | ||
| - libedit=3.1.20191231=he28a2e2_2 | ||
| - libevent=2.1.12=hf998b51_1 | ||
| - libexpat=2.6.2=h59595ed_0 | ||
| - libffi=3.4.2=h7f98852_5 | ||
| - libflac=1.4.3=h59595ed_0 | ||
| - libgcc-ng=13.2.0=h807b86a_5 | ||
| - libgcrypt=1.10.3=hd590300_0 | ||
| - libgettextpo=0.22.5=h59595ed_2 | ||
| - libgettextpo-devel=0.22.5=h59595ed_2 | ||
| - libglib=2.80.0=hf2295e7_4 | ||
| - libgomp=13.2.0=h807b86a_5 | ||
| - libgpg-error=1.48=h71f35ed_0 | ||
| - libiconv=1.17=hd590300_2 | ||
| - libjpeg-turbo=3.0.0=hd590300_1 | ||
| - libllvm15=15.0.7=hb3ce162_4 | ||
| - libllvm18=18.1.3=h2448989_0 | ||
| - libnsl=2.0.1=hd590300_0 | ||
| - libogg=1.3.4=h7f98852_1 | ||
| - libopus=1.3.1=h7f98852_1 | ||
| - libpng=1.6.43=h2797004_0 | ||
| - libpq=16.2=h33b98f1_1 | ||
| - libsndfile=1.2.2=hc60ed4a_1 | ||
| - libsqlite=3.45.2=h2797004_0 | ||
| - libstdcxx-ng=13.2.0=h7e041cc_5 | ||
| - libsystemd0=255=h3516f8a_1 | ||
| - libtiff=4.6.0=h1dd3fc0_3 | ||
| - libuuid=2.38.1=h0b41bf4_0 | ||
| - libvorbis=1.3.7=h9c3ff4c_0 | ||
| - libwebp=1.3.2=h658648e_1 | ||
| - libwebp-base=1.3.2=hd590300_1 | ||
| - libxcb=1.15=h0b41bf4_0 | ||
| - libxcrypt=4.4.36=hd590300_1 | ||
| - libxkbcommon=1.7.0=h662e7e4_0 | ||
| - libxml2=2.12.6=h232c23b_1 | ||
| - libzlib=1.2.13=hd590300_5 | ||
| - lz4-c=1.9.4=hcb278e6_0 | ||
| - mpg123=1.32.6=h59595ed_0 | ||
| - mysql-common=8.3.0=hf1915f5_4 | ||
| - mysql-libs=8.3.0=hca2cd23_4 | ||
| - ncurses=6.4.20240210=h59595ed_0 | ||
| - nspr=4.35=h27087fc_0 | ||
| - nss=3.98=h1d7d5a4_0 | ||
| - openssl=3.2.1=hd590300_1 | ||
| - pcre2=10.43=hcad00b1_0 | ||
| - pip=24.0=pyhd8ed1ab_0 | ||
| - pixman=0.43.2=h59595ed_0 | ||
| - pthread-stubs=0.4=h36c2ea0_1001 | ||
| - pulseaudio-client=17.0=hb77b528_0 | ||
| - python=3.12.2=hab00c5b_0_cpython | ||
| - qt=5.15.8=hf11cfaa_0 | ||
| - qt-main=5.15.8=h112747c_20 | ||
| - qt-webengine=5.15.8=h3e791b3_6 | ||
| - readline=8.2=h8228510_1 | ||
| - setuptools=69.2.0=pyhd8ed1ab_0 | ||
| - tk=8.6.13=noxft_h4845f30_101 | ||
| - tzdata=2024a=h0c530f3_0 | ||
| - wheel=0.43.0=pyhd8ed1ab_1 | ||
| - xcb-util=0.4.0=hd590300_1 | ||
| - xcb-util-image=0.4.0=h8ee46fc_1 | ||
| - xcb-util-keysyms=0.4.0=h8ee46fc_1 | ||
| - xcb-util-renderutil=0.3.9=hd590300_1 | ||
| - xcb-util-wm=0.4.1=h8ee46fc_1 | ||
| - xkeyboard-config=2.41=hd590300_0 | ||
| - xorg-compositeproto=0.4.2=h7f98852_1001 | ||
| - xorg-damageproto=1.2.1=h7f98852_1002 | ||
| - xorg-fixesproto=5.0=h7f98852_1002 | ||
| - xorg-inputproto=2.3.2=h7f98852_1002 | ||
| - xorg-kbproto=1.0.7=h7f98852_1002 | ||
| - xorg-libice=1.1.1=hd590300_0 | ||
| - xorg-libsm=1.2.4=h7391055_0 | ||
| - xorg-libx11=1.8.9=h8ee46fc_0 | ||
| - xorg-libxau=1.0.11=hd590300_0 | ||
| - xorg-libxcomposite=0.4.6=h0b41bf4_1 | ||
| - xorg-libxdamage=1.1.5=h7f98852_1 | ||
| - xorg-libxdmcp=1.1.3=h7f98852_0 | ||
| - xorg-libxext=1.3.4=h0b41bf4_2 | ||
| - xorg-libxfixes=5.0.3=h7f98852_1004 | ||
| - xorg-libxi=1.7.10=h7f98852_0 | ||
| - xorg-libxrandr=1.5.2=h7f98852_1 | ||
| - xorg-libxrender=0.9.11=hd590300_0 | ||
| - xorg-libxtst=1.2.3=h7f98852_1002 | ||
| - xorg-randrproto=1.5.0=h7f98852_1001 | ||
| - xorg-recordproto=1.14.2=h7f98852_1002 | ||
| - xorg-renderproto=0.11.1=h7f98852_1002 | ||
| - xorg-util-macros=1.19.3=h7f98852_0 | ||
| - xorg-xextproto=7.3.0=h0b41bf4_1003 | ||
| - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002 | ||
| - xorg-xproto=7.0.31=h7f98852_1007 | ||
| - xz=5.2.6=h166bdaf_0 | ||
| - zlib=1.2.13=hd590300_5 | ||
| - zstd=1.5.5=hfc55251_0 | ||
|
|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,12 @@ | ||
| name: basic | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - defaults | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=conda_forge | ||
| - _openmp_mutex=4.5=2_gnu | ||
| - coreutils=9.5=hd590300_0 | ||
| - libgcc-ng=13.2.0=h807b86a_5 | ||
| - libgomp=13.2.0=h807b86a_5 | ||
|
|
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