GitHub - LoLab-MSM/BIND

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
flux_caspase		flux_caspase
flux_combined		flux_combined
flux_combined_high_binding		flux_combined_high_binding
flux_mito		flux_mito
log_casp_act		log_casp_act
log_casp_inh		log_casp_inh
log_caspase		log_caspase
log_complete		log_complete
log_complete_bcl2		log_complete_bcl2
log_mito		log_mito
log_mito_act		log_mito_act
log_mito_bcl2		log_mito_bcl2
LICENSE.txt		LICENSE.txt
README.txt		README.txt
calibrated_model.py		calibrated_model.py
earm_data.csv		earm_data.csv

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To estimate the evidence/expected value of apoptosis/signal flux of models in this repository

  1. Install PySB and all dependencies, such as BioNetGen.
  2. Install MultiNest.
  3. Install pyMultiNest from the LoLab fork at https://github.com/LoLab-VU/PyMultiNest.
  4. Modify the write.py file to specify the PySB, BioNetGen, and output directories.
  5. Run write.py to produce pyMultiNest run files, one for each model.
  6. Run each of the model specific run files.