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@LooseLab

LooseLab

The LooseLab is based in the University of Nottingham's school of life sciences.

Popular repositories Loading

  1. readfish readfish Public

    CLI tool for flexible and fast adaptive sampling on ONT sequencers

    Python 169 33

  2. bulkvis bulkvis Public

    Python 46 8

  3. minotourapp minotourapp Public

    Minotour API, web and client code

    JavaScript 29 1

  4. Icarust Icarust Public

    A fully featured MinKNOW simulator for testing read until experiments.

    Rust 16 6

  5. read_until_api_v2 read_until_api_v2 Public archive

    Python3 Read Until API implementation

    Python 11 1

  6. minotourcli minotourcli Public

    Python 10 1

Repositories

Showing 10 of 36 repositories
  • LIFE4138 Public

    teaching materials for life4138

    LooseLab/LIFE4138’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Oct 11, 2024
  • ROBIN Public

    A package to run real time analysis of nanopore methylation data.

    LooseLab/ROBIN’s past year of commit activity
    Python 0 0 10 0 Updated Oct 6, 2024
  • ROBIN_test_set_A Public

    Control test data set for ROBIN

    LooseLab/ROBIN_test_set_A’s past year of commit activity
    1 GPL-3.0 0 0 0 Updated Oct 5, 2024
  • readfish Public

    CLI tool for flexible and fast adaptive sampling on ONT sequencers

    LooseLab/readfish’s past year of commit activity
    Python 169 GPL-3.0 33 16 (2 issues need help) 0 Updated Sep 12, 2024
  • CNV_gene_plot Public

    A tool to generate CNV plots with the ability to plot GOIs from a bed file.

    LooseLab/CNV_gene_plot’s past year of commit activity
    Python 0 0 1 0 Updated Aug 7, 2024
  • barcode_paper_nb Public

    Companion repo for https://www.biorxiv.org/content/10.1101/2021.12.01.470722v1

    LooseLab/barcode_paper_nb’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 1, 2024
  • Icarust Public

    A fully featured MinKNOW simulator for testing read until experiments.

    LooseLab/Icarust’s past year of commit activity
    Rust 16 MPL-2.0 6 7 0 Updated Jul 10, 2024
  • minotourcli Public
    LooseLab/minotourcli’s past year of commit activity
    Python 10 MIT 1 10 2 Updated Jul 2, 2024
  • ROBIN_cnv_object Public
    LooseLab/ROBIN_cnv_object’s past year of commit activity
    Python 0 0 0 0 Updated Jul 2, 2024
  • Icarust_supplementary_data Public

    Supplementary data for the corrsponding Icarust paper. See README.md for layout of files.

    LooseLab/Icarust_supplementary_data’s past year of commit activity
    Jupyter Notebook 0 MPL-2.0 0 0 0 Updated Jun 20, 2024
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