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DESCRIPTION
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DESCRIPTION
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Package: MassOmics
Type: Package
Title: Data extraction pipeline for large-scale GC-MS metabolomics datasets
Version: 2.5.3
Date:
Depends: R (>= 3.5.0), methods, Biobase, BiocParallel, MSnbase, ncdf4
Author: George GUO, Ting-Li Han, Elizabeth J. McKenzie, M. Beatrix Jones
Maintainer: George GUO <George.GUO@auckland.ac.nz>
Description: "MassOmics" is designed to bring together R packages and scripts for GC-MS data pro-cessing to rapidly integrate and annotate peaks in large-scale datasets, all within a graphical user-friendly interface. This package also provides identification of background contaminants, various normalisation methods, correction of analytical variation, and basic multivariate statistical analysis.
License: GPL-2
LazyLoad: yes
NeedsCompilation: no
Packaged:
RoxygenNote: 7.1.2
Encoding: UTF-8
Imports:
tcltk,tcltk2,Rcpp,openxlsx,tidyr,randomForest,rfviz,ggpubr,extrafont,xcms,svDialogs,reticulate,
svGUI,KEGGREST,RColorBrewer,rgl,mixOmics,plyr,flux,tkrplot,multtest,XML,checkmate,pbapply,
CAMERA,qvalue,doParallel,BiocManager,pacman,backports,BiocParallel,zip,stringdist,OneR,pander,uuid,
officer,systemfonts,gdtools,rvg,impute,vctrs
Suggests:
covr,
devtools
VignetteBuilder: knitr
biocViews: ImmunoOncology, MassSpectrometry, Metabolomics