Skip to content

Commit

Permalink
deploy: 7d6c59f
Browse files Browse the repository at this point in the history
  • Loading branch information
github-actions committed Sep 20, 2024
1 parent 02559df commit 0640380
Show file tree
Hide file tree
Showing 29 changed files with 678 additions and 678 deletions.
Binary file modified .doctrees/PathSimAnalysis.doctree
View file
Binary file not shown.
Binary file modified .doctrees/environment.pickle
View file
Binary file not shown.
Binary file modified .doctrees/mdakits.doctree
View file
Binary file not shown.
38 changes: 19 additions & 19 deletions MDANCE.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -43,8 +43,8 @@
<link rel="author" title="About these documents" href="about.html" />
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="ProLIF" href="ProLIF.html" />
<link rel="prev" title="openmm-mdanalysis-reporter" href="openmm-mdanalysis-reporter.html" />
<link rel="next" title="lipidorderkit" href="lipidorderkit.html" />
<link rel="prev" title="domhmm" href="domhmm.html" />
</head>

<body class="wy-body-for-nav">
Expand Down Expand Up @@ -87,30 +87,30 @@
<p class="caption" role="heading"><span class="caption-text">MDAKit Registry</span></p>
<ul class="current">
<li class="toctree-l1 current"><a class="reference internal" href="mdakits.html">Registry of MDAnalysis Toolkits (MDAKits)</a><ul class="current">
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
<li class="toctree-l2"><a class="reference internal" href="PathSimAnalysis.html">PathSimAnalysis</a></li>
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
<li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
<li class="toctree-l2"><a class="reference internal" href="lipyds.html">lipyds</a></li>
<li class="toctree-l2"><a class="reference internal" href="openmm-mdanalysis-reporter.html">openmm-mdanalysis-reporter</a></li>
<li class="toctree-l2"><a class="reference internal" href="propkatraj.html">propkatraj</a></li>
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdacli.html">mdacli</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
<li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
<li class="toctree-l2"><a class="reference internal" href="spyrmsdkit.html">spyrmsdkit</a></li>
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdakit-sasa.html">mdakit-sasa</a></li>
<li class="toctree-l2"><a class="reference internal" href="domhmm.html">domhmm</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">MDANCE</a><ul>
<li class="toctree-l3"><a class="reference internal" href="#installation-instructions">Installation instructions</a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdakit-sasa.html">mdakit-sasa</a></li>
<li class="toctree-l2"><a class="reference internal" href="lipidorderkit.html">lipidorderkit</a></li>
<li class="toctree-l2"><a class="reference internal" href="domhmm.html">domhmm</a></li>
<li class="toctree-l2"><a class="reference internal" href="PathSimAnalysis.html">PathSimAnalysis</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdachecker.html">mdachecker</a></li>
<li class="toctree-l2"><a class="reference internal" href="spyrmsdkit.html">spyrmsdkit</a></li>
<li class="toctree-l2"><a class="reference internal" href="propkatraj.html">propkatraj</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdacli.html">mdacli</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
<li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
<li class="toctree-l2"><a class="reference internal" href="zarrtraj.html">zarrtraj</a></li>
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
<li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
<li class="toctree-l2"><a class="reference internal" href="lipyds.html">lipyds</a></li>
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>
<li class="toctree-l2"><a class="reference internal" href="solvation-analysis.html">solvation-analysis</a></li>
</ul>
</li>
Expand Down Expand Up @@ -186,8 +186,8 @@ <h2>Installation instructions<a class="headerlink" href="#installation-instructi
</div>
</div>
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
<a href="openmm-mdanalysis-reporter.html" class="btn btn-neutral float-left" title="openmm-mdanalysis-reporter" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
<a href="ProLIF.html" class="btn btn-neutral float-right" title="ProLIF" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
<a href="domhmm.html" class="btn btn-neutral float-left" title="domhmm" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
<a href="lipidorderkit.html" class="btn btn-neutral float-right" title="lipidorderkit" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
</div>

<hr/>
Expand Down
44 changes: 22 additions & 22 deletions PathSimAnalysis.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -43,8 +43,8 @@
<link rel="author" title="About these documents" href="about.html" />
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="mdachecker" href="mdachecker.html" />
<link rel="prev" title="domhmm" href="domhmm.html" />
<link rel="next" title="mda-tui" href="mda-tui.html" />
<link rel="prev" title="Registry of MDAnalysis Toolkits (MDAKits)" href="mdakits.html" />
</head>

<body class="wy-body-for-nav">
Expand Down Expand Up @@ -87,30 +87,30 @@
<p class="caption" role="heading"><span class="caption-text">MDAKit Registry</span></p>
<ul class="current">
<li class="toctree-l1 current"><a class="reference internal" href="mdakits.html">Registry of MDAnalysis Toolkits (MDAKits)</a><ul class="current">
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
<li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
<li class="toctree-l2"><a class="reference internal" href="lipyds.html">lipyds</a></li>
<li class="toctree-l2"><a class="reference internal" href="openmm-mdanalysis-reporter.html">openmm-mdanalysis-reporter</a></li>
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdakit-sasa.html">mdakit-sasa</a></li>
<li class="toctree-l2"><a class="reference internal" href="lipidorderkit.html">lipidorderkit</a></li>
<li class="toctree-l2"><a class="reference internal" href="domhmm.html">domhmm</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">PathSimAnalysis</a><ul>
<li class="toctree-l3"><a class="reference internal" href="#installation-instructions">Installation instructions</a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="mdachecker.html">mdachecker</a></li>
<li class="toctree-l2"><a class="reference internal" href="spyrmsdkit.html">spyrmsdkit</a></li>
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
<li class="toctree-l2"><a class="reference internal" href="openmm-mdanalysis-reporter.html">openmm-mdanalysis-reporter</a></li>
<li class="toctree-l2"><a class="reference internal" href="propkatraj.html">propkatraj</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdacli.html">mdacli</a></li>
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
<li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdacli.html">mdacli</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
<li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
<li class="toctree-l2"><a class="reference internal" href="spyrmsdkit.html">spyrmsdkit</a></li>
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdakit-sasa.html">mdakit-sasa</a></li>
<li class="toctree-l2"><a class="reference internal" href="domhmm.html">domhmm</a></li>
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
<li class="toctree-l2"><a class="reference internal" href="lipidorderkit.html">lipidorderkit</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdachecker.html">mdachecker</a></li>
<li class="toctree-l2"><a class="reference internal" href="zarrtraj.html">zarrtraj</a></li>
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
<li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
<li class="toctree-l2"><a class="reference internal" href="lipyds.html">lipyds</a></li>
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>
<li class="toctree-l2"><a class="reference internal" href="solvation-analysis.html">solvation-analysis</a></li>
</ul>
</li>
Expand Down Expand Up @@ -172,7 +172,7 @@
<section id="installation-instructions">
<h2>Installation instructions<a class="headerlink" href="#installation-instructions" title="Link to this heading"></a></h2>
<p>The latest version of PathSimAnalysis can be installed using the following:</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pip<span class="w"> </span>install<span class="w"> </span>pathsimanalysis
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>mamba<span class="w"> </span>install<span class="w"> </span>-c<span class="w"> </span>conda-forge<span class="w"> </span>pathsimanalysis
</pre></div>
</div>
<p>The source code of PathSimAnalysis can be installed using the following:</p>
Expand All @@ -186,8 +186,8 @@ <h2>Installation instructions<a class="headerlink" href="#installation-instructi
</div>
</div>
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
<a href="domhmm.html" class="btn btn-neutral float-left" title="domhmm" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
<a href="mdachecker.html" class="btn btn-neutral float-right" title="mdachecker" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
<a href="mdakits.html" class="btn btn-neutral float-left" title="Registry of MDAnalysis Toolkits (MDAKits)" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
<a href="mda-tui.html" class="btn btn-neutral float-right" title="mda-tui" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
</div>

<hr/>
Expand Down
40 changes: 20 additions & 20 deletions ProLIF.html
View file
Original file line number Diff line number Diff line change
Expand Up @@ -43,8 +43,8 @@
<link rel="author" title="About these documents" href="about.html" />
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="transport-analysis" href="transport-analysis.html" />
<link rel="prev" title="MDANCE" href="MDANCE.html" />
<link rel="next" title="solvation-analysis" href="solvation-analysis.html" />
<link rel="prev" title="lipyds" href="lipyds.html" />
</head>

<body class="wy-body-for-nav">
Expand Down Expand Up @@ -87,30 +87,30 @@
<p class="caption" role="heading"><span class="caption-text">MDAKit Registry</span></p>
<ul class="current">
<li class="toctree-l1 current"><a class="reference internal" href="mdakits.html">Registry of MDAnalysis Toolkits (MDAKits)</a><ul class="current">
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
<li class="toctree-l2"><a class="reference internal" href="PathSimAnalysis.html">PathSimAnalysis</a></li>
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
<li class="toctree-l2"><a class="reference internal" href="openmm-mdanalysis-reporter.html">openmm-mdanalysis-reporter</a></li>
<li class="toctree-l2"><a class="reference internal" href="propkatraj.html">propkatraj</a></li>
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdacli.html">mdacli</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
<li class="toctree-l2"><a class="reference internal" href="membrane-curvature.html">membrane-curvature</a></li>
<li class="toctree-l2"><a class="reference internal" href="spyrmsdkit.html">spyrmsdkit</a></li>
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdakit-sasa.html">mdakit-sasa</a></li>
<li class="toctree-l2"><a class="reference internal" href="domhmm.html">domhmm</a></li>
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
<li class="toctree-l2"><a class="reference internal" href="lipidorderkit.html">lipidorderkit</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdachecker.html">mdachecker</a></li>
<li class="toctree-l2"><a class="reference internal" href="zarrtraj.html">zarrtraj</a></li>
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
<li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
<li class="toctree-l2"><a class="reference internal" href="lipyds.html">lipyds</a></li>
<li class="toctree-l2"><a class="reference internal" href="openmm-mdanalysis-reporter.html">openmm-mdanalysis-reporter</a></li>
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">ProLIF</a><ul>
<li class="toctree-l3"><a class="reference internal" href="#installation-instructions">Installation instructions</a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdakit-sasa.html">mdakit-sasa</a></li>
<li class="toctree-l2"><a class="reference internal" href="lipidorderkit.html">lipidorderkit</a></li>
<li class="toctree-l2"><a class="reference internal" href="domhmm.html">domhmm</a></li>
<li class="toctree-l2"><a class="reference internal" href="PathSimAnalysis.html">PathSimAnalysis</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdachecker.html">mdachecker</a></li>
<li class="toctree-l2"><a class="reference internal" href="spyrmsdkit.html">spyrmsdkit</a></li>
<li class="toctree-l2"><a class="reference internal" href="propkatraj.html">propkatraj</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdacli.html">mdacli</a></li>
<li class="toctree-l2"><a class="reference internal" href="mdaencore.html">mdaencore</a></li>
<li class="toctree-l2"><a class="reference internal" href="waterdynamics.html">waterdynamics</a></li>
<li class="toctree-l2"><a class="reference internal" href="zarrtraj.html">zarrtraj</a></li>
<li class="toctree-l2"><a class="reference internal" href="solvation-analysis.html">solvation-analysis</a></li>
</ul>
</li>
Expand Down Expand Up @@ -187,8 +187,8 @@ <h2>Installation instructions<a class="headerlink" href="#installation-instructi
</div>
</div>
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
<a href="MDANCE.html" class="btn btn-neutral float-left" title="MDANCE" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
<a href="transport-analysis.html" class="btn btn-neutral float-right" title="transport-analysis" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
<a href="lipyds.html" class="btn btn-neutral float-left" title="lipyds" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
<a href="solvation-analysis.html" class="btn btn-neutral float-right" title="solvation-analysis" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
</div>

<hr/>
Expand Down
2 changes: 1 addition & 1 deletion _sources/PathSimAnalysis.rst.txt
View file
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ The latest version of PathSimAnalysis can be installed using the following:

.. code-block:: bash
pip install pathsimanalysis
mamba install -c conda-forge pathsimanalysis
The source code of PathSimAnalysis can be installed using the following:

Expand Down
Loading

0 comments on commit 0640380

Please sign in to comment.