Merge branch 'main' into conda-docs

.github/workflows/docs.yaml

@@ -39,7 +39,6 @@ jobs:
     - name: Build and install package
       run: |
           mamba env update -n test -f devtools/conda-envs/test_env.yaml
-          python setup.py build_ext -i
           python -m pip install -e .
 
     - name: build docs
@@ -59,4 +58,4 @@ jobs:
       if: github.event_name == 'pull_request'
       with:
         name: pr_docs
-        path: ./docs/build/
+        path: ./docs/build/

.github/workflows/gh-ci.yaml

@@ -155,11 +155,11 @@ jobs:
 
     - name: Install dependencies
       run: |
-        pip install setuptools cython numpy twine
+        pip install pipx twine
 
     - name: Build package
       run: |
-        python setup.py sdist
+        python -m pipx run build --sdist
 
     - name: Check package build
       run: |

CHANGELOG.md

@@ -22,13 +22,14 @@ The rules for this file:
 - IAlibay
 
 ### Added
-- Added conda-forge install instruction to docs (PR #14)
+- Added conda-forge install instruction to docs (Issue #13, PR #14)
+- Support for Python 3.12 (Issue #11, PR #12)
 
 ### Fixed
-<!-- Bug fixes -->
+- Changed logger to no longer point to MDAnalysis.analysis
 
 ### Changed
-<!-- Changes in existing functionality -->
+- Switch from versioneer to versioningit
 
 ### Deprecated
 <!-- Soon-to-be removed features -->

pathsimanalysis/__init__.py

@@ -10,13 +10,10 @@
 
 due.cite(Doi("10.1371/journal.pcbi.1004568"),
          description="Path Similarity Analysis algorithm and implementation",
-         path="MDAnalysis.analysis.psa",
+         path="pathsimanalysis.psa",
          cite_module=True)
 del Doi
 
-# Handle versioneer
-from ._version import get_versions
-versions = get_versions()
-__version__ = versions['version']
-__git_revision__ = versions['full-revisionid']
-del get_versions, versions
+# Handle version
+from importlib.metadata import version
+__version__ = version("pathsimanalysis")