Master Blaster

NEWS

• isPcr has been replaced by mlst (https://github.com/tseemann/mlst) with a custom allele database
• ng-mast.net is no longer online or maintained, so this version has been migrated to use the pubMLST database instead.
• Updating of the database is done via pubMLSTs API, replacing the need for web-scraping.
• NG-STAR is now integrated into ngmaster. NG-STAR is an AMR typing scheme for N. gonorrhoeae, using seven resistance alleles. --comments function is also implemented which allows to download free-text fields from pubMLST for each allele.
• Code has been refactored

Packaging Fiesta

NEWS

• Added support for bumpversion to make it easier to update
• Moved utilities from __init__.py to utils.py
• Renamed ngmaster.py to run_ngmaster.py to avoid any confusion when importing
• Pushed to pypi
• Updated documentation on how to install (now from pypi). Conda and Brew will also be available.
• Added TravisCI support
• Added __version__ to __init__.py

Monkey Python3 Perch

NEWS

• Added option to force DB update without requesting user blessing (ngmaster --dbupdate --assumeyes), which makes it possible to do it programmatically

BUGS

• Fixed bug with reading the README file when pip installing in some systems
• Fixed bug in parsing user response when double checking request to update DB.

Monkey Python3

NEWS

• Code has been updated to work under Python3
• README has been updated to reflect changes to code
• Mark Schultz added as author

Pre-release v0.4

Working version with bug fix for #22 to detect multiple alleles.
Thanks to Simon Harris for picking up the bug.

First packaged release

v0.1

Update README.md