Pandoc Container with Mustache template for MGMIC metegenomic workflow.
docker build -t mgmic/report .
Example
docker run -d -v /data:/data mgmic/report make_report -f VIGDIS3_forward_paired.50K.fq -r VIGDIS3_reverse_paired.50K.fq -t c5553b13-2493-4c53-ab27-f58227eee417
Example Output : http://mgmic.oscer.ou.edu/mgmic_tasks/c5553b13-2493-4c53-ab27-f58227eee417/report.html
The report will be placed in the mgmic_tasks folder under the task_id.