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@MIDA-group

Methods for Image Data Analysis - MIDA

MIDA is a research group in Computerized Image Analysis at Uppsala University, Sweden

Research in Computerized Image Analysis at Uppsala University, Sweden

The MIDA group focuses on development of general methods for image data analysis. Our aim is to devise generally applicable methods, which work well independent of the particular application and types of images used. We therefore strive for robust methods which are performing well under varying conditions. Also aiming for practically useful methods, we essentially always collaborate with other groups, most often withing medicine and biomedicine.

Popular repositories Loading

  1. CoMIR CoMIR Public

    Framework for joint representation learning, evaluation through multimodal registration and comparison with image translation based approaches

    Jupyter Notebook 72 11

  2. MultiRegEval MultiRegEval Public

    Evaluation Framework for Multimodal Biomedical Image Registration Methods

    Python 30 3

  3. globalign globalign Public

    Fast global mutual information-based rigid alignment in the Fourier domain

    Python 28 4

  4. py_alpha_amd_release py_alpha_amd_release Public

    Py-Alpha-AMD Registration Framework - Robust Image Registration - Public Release

    Python 20 8

  5. CytoBrowser CytoBrowser Public

    CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.

    JavaScript 16 7

  6. inspire inspire Public

    INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration

    C++ 11

Repositories

Showing 10 of 17 repositories
  • CoMIR Public

    Framework for joint representation learning, evaluation through multimodal registration and comparison with image translation based approaches

    MIDA-group/CoMIR’s past year of commit activity
    Jupyter Notebook 72 11 4 0 Updated Sep 19, 2024
  • CytoBrowser Public

    CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.

    MIDA-group/CytoBrowser’s past year of commit activity
    JavaScript 16 GPL-3.0 7 87 (2 issues need help) 3 Updated Sep 11, 2024
  • occ_cyto Public

    Sparse key instance detection on PKGBM dataset

    MIDA-group/occ_cyto’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 2, 2024
  • globalign Public

    Fast global mutual information-based rigid alignment in the Fourier domain

    MIDA-group/globalign’s past year of commit activity
    Python 28 MIT 4 0 0 Updated Aug 3, 2024
  • MIDA-group/OralCancerMILvsSIL’s past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated May 1, 2024
  • CMIF Public

    Fast computation of cross-mutual information function (CMIF) in the frequency domain

    MIDA-group/CMIF’s past year of commit activity
    MATLAB 1 BSD-2-Clause 0 0 0 Updated Nov 19, 2023
  • .github Public
    MIDA-group/.github’s past year of commit activity
    0 0 0 0 Updated Nov 9, 2023
  • MIDA-group/SampledABMIL’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 1 0 0 Updated Jul 14, 2023
  • CoMIR_INSPIRE Public

    Framework for Multimodal Deformable Image Registration. Coordinated equivariant representation learning (CoMIR) combined with robust deformable registration by INSPIRE.

    MIDA-group/CoMIR_INSPIRE’s past year of commit activity
    Python 7 1 0 0 Updated Mar 7, 2023
  • MultiRegEval Public

    Evaluation Framework for Multimodal Biomedical Image Registration Methods

    MIDA-group/MultiRegEval’s past year of commit activity
    Python 30 MIT 3 0 0 Updated Nov 29, 2022

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