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searchindex.js
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Notes","Applications","aggregate-images","average-dofs","average-images","average-measure","average-overlap","bisect-dof","blend-surface","calculate","calculate-boundary-map","calculate-distance-map","calculate-element-wise","calculate-exponential-map","calculate-filtering","calculate-gradients","calculate-lie-bracket","calculate-logarithmic-map","calculate-surface-attributes","calculate-surface-map","calculate-surface-spectrum","calculate-volume-map","change-label","close-image","close-scalars","combine-images","compose-dofs","compose-maps","construct-atlas","convert-dof","convert-dof2csv","convert-dof2velo","convert-image","convert-pointset","convert-pointset-to-mat","copy-pointset-attributes","copy-pointset-attributes-from-mat","cut-brain","decimate-surface","deform-mesh","delete-pointset-attributes","detect-edges","dilate-image","dilate-scalars","downsample-image","draw-em","edit-dof","edit-image","em","em-hard-segmentation","erode-image","erode-scalars","evaluate-atlas","evaluate-cardiac-motion","evaluate-distance","evaluate-distortion","evaluate-dof","evaluate-jacobian","evaluate-map","evaluate-overlap","evaluate-similarity","evaluate-surface-map","evaluate-surface-mesh","evaluate-surface-overlap","evaluate-volume-map","extract-connected-components","extract-connected-points","extract-image-region","extract-image-slice","extract-image-volume","extract-pointset-cells","extract-pointset-surface","extract-surface","fill-holes","fill-holes-nn-based","flip-image","help-rst","info","init-dof","invert-dof","kmeans","map-boundary","map-surface","map-volume","match-histogram","match-points","measure-volume","merge-surfaces","normalize","offset-surface","open-image","open-scalars","project-onto-surface","recon-neonatal-cortex","reflect-image","register","remesh","remesh-surface","resample-image","smooth-image","smooth-surface","split-labels","subdivide-brain-image","transform-image","transform-points","Download","Get Started","Support","Home","Installation","Modules","Common Module","Deformable Module","Draw-EM Module","Image Module","I/O Module","Mapping Module","Numerics Module","Point Set Module","Registration Module","Scripting Module","Transformation Module","People","Publications","Table of Contents"],titleterms:{"0rc1":4,"0rc2":4,"class":1,"public":127,advanc:43,advisor:126,aggreg:6,annot:[],api:0,applic:[5,110],apr:4,argument:[6,8,9,10,12,14,15,22,23,24,25,27,28,32,33,35,37,38,39,40,41,44,45,46,47,48,51,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,76,80,81,83,85,86,87,88,89,91,93,94,95,96,100,101,102,103,104,106,107],arithmet:[13,16],atla:[32,56],attribut:[22,39,40,44],averag:[7,8,9,10],background:112,base:78,bash:110,bisect:11,blend:12,boundari:[14,85],bracket:20,brain:[41,106],build:113,calcul:[13,14,15,16,17,18,19,20,21,22,23,24,25],cardiac:57,cell:74,chang:26,close:[27,28],cmake:113,code:109,combin:29,command:[5,6,8,9,10,12,14,15,17,20,21,23,24,25,27,28,29,30,32,33,34,35,36,37,38,39,40,41,42,44,45,46,47,48,51,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,76,79,80,82,85,86,87,88,89,91,92,93,94,95,96,97,98,100,101,102,103,104,106,107,108,110,112],common:[114,115],complet:110,compon:69,compos:[30,31],configur:[99,113],connect:[69,70],construct:32,contributor:126,convert:[33,34,35,36,37,38],copi:[39,40],core:114,cortex:97,criterion:43,curvatur:22,cut:41,data:[13,16],decim:42,deform:[43,82,114,116,127],delet:44,depend:113,descript:[6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108],detect:45,develop:126,dilat:[46,47],distanc:[15,58],distort:59,dof2csv:34,dof2velo:35,dof:[7,11,30,33,50,60,82,83],download:109,downsampl:48,draw:[49,114,117,127],edg:45,edit:[50,51],element:16,enabl:110,erod:[54,55],euclidean:15,evalu:[56,57,58,59,60,61,62,63,64,65,66,67,68],exampl:[13,16,31,50,113],expect:[],exponenti:17,extern:114,extract:[69,70,71,72,73,74,75,76],file:2,fill:[77,78],filter:18,flip:79,form:82,format:[12,28,47,55,95],found:113,free:82,from:40,get:110,gradient:19,gui:113,hard:53,header:2,help:80,histogram:88,hole:[77,78],imag:[6,8,22,27,29,36,46,48,51,54,71,72,73,79,81,94,98,102,103,106,107,112,114,118],info:81,init:82,input:[7,8,13,16,43,52,53,77,78,84,99],instal:[110,113],invert:83,jacobian:61,jan:4,kmean:84,label:[26,105],licens:109,lie:20,local:22,logarithm:21,map:[14,15,17,21,23,25,31,62,65,68,85,86,87,114,120],mask:[13,16],mat:[38,40],match:[88,89],maxim:[],measur:[9,90],medic:112,merg:91,mesh:[43,66],mirtk:112,model:43,modul:[112,114,115,116,117,118,119,120,121,122,123,124,125],motion:57,namespac:3,neonat:97,normal:[22,92],note:4,numer:[114,121],offset:93,onto:96,open:[94,95],oper:[13,16],optim:43,option:[5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108],output:[12,13,16,23,25,28,43,47,55,64,75,82,86,87,95,99,100,101],overlap:[10,63,67],own:110,packag:114,parallel:[5,6,8,14,15,17,20,21,22,23,24,25,39,42,43,61,62,63,64,65,68,76,85,86,87,88,89,92,99,103,107],parcel:22,peopl:126,point:[70,81,89,108,114,122,127],pointset:[37,38,39,40,44,74,75],project:96,recon:97,refer:0,reflect:98,region:71,regist:99,registr:[112,114,123,127],releas:4,remesh:[100,101],requir:[57,109,113],resampl:102,rescal:[13,16],rst:80,run:110,scalar:[28,47,55,95],script:[114,124],segment:53,set:[81,114,122,127],similar:64,slice:72,smooth:[22,103,104],softwar:[109,110,126],sourc:109,spectrum:24,split:105,standard:[5,6,7,8,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,33,34,35,36,37,39,41,42,43,44,45,46,47,48,51,52,53,54,55,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,74,75,76,77,78,79,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,98,99,100,101,102,103,104,105,106,107,108],start:110,statist:[13,16],step:113,stop:43,subdivid:106,support:111,surfac:[12,22,23,24,42,65,66,67,75,76,86,91,93,96,101,104],synopsi:[6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108],system:109,termin:[5,6,8,13,14,15,16,17,20,21,22,23,24,25,39,42,43,61,62,63,64,65,68,76,85,86,87,88,89,92,99,103,107],threshold:[13,16],toolkit:112,transform:[7,15,81,107,108,114,125],volum:[25,68,73,87,90],wise:16,write:110,your:110}})