From 282ae3bd68d585aab2970805dab513036b61ff5c Mon Sep 17 00:00:00 2001 From: gavinr1 Date: Thu, 19 Dec 2024 13:52:39 +0100 Subject: [PATCH] fix numbering --- docs/strategies/strategy_02.rst | 2 +- docs/strategies/strategy_04.rst | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/strategies/strategy_02.rst b/docs/strategies/strategy_02.rst index 40ea2ed..b685324 100644 --- a/docs/strategies/strategy_02.rst +++ b/docs/strategies/strategy_02.rst @@ -51,6 +51,6 @@ To calculate the mask, all you need is your tomogram and the latest TomoTwin mod .. prompt:: bash $ - CUDA_VISIBLE_DEVICES=0,1 tomotwin_embed.py tomogram -v tomo/tomo.mrc -m tomotwin_latest.pth --mask mask/tomo_mask.mrc + CUDA_VISIBLE_DEVICES=0,1 tomotwin_embed.py tomogram -v tomo/tomo.mrc -m tomotwin_latest.pth --mask mask/tomo_mask.mrc -o out/embed/tomo/ -s 2 Once the embeddings are computed, you can simply continue with either the reference or clustering workflow. diff --git a/docs/strategies/strategy_04.rst b/docs/strategies/strategy_04.rst index 6d0c6c2..acdea49 100644 --- a/docs/strategies/strategy_04.rst +++ b/docs/strategies/strategy_04.rst @@ -1,4 +1,4 @@ -Strategy 3: Manually refining UMAPs from selected embeddings (Napari GPU workaround) +Strategy 4: Manually refining UMAPs from selected embeddings (Napari GPU workaround) ======================================================== When to use it