Skip to content

Latest commit

 

History

History
15 lines (12 loc) · 753 Bytes

readme.md

File metadata and controls

15 lines (12 loc) · 753 Bytes
Raw

Quality control analyses and outputs for the probes used in the final panel.

Rscript src/check.r \
	../panel.csv \
	data/all_target_segments_Methyl_UniversityofBristol_lung-cancer-risk-panel_shift100_1X_MTE-93452736_hg19_LOWStringency.bed \
    data/all_target_segments_covered_by_probes_Methyl_UniversityofBristol_lung-cancer-risk-panel_shift100_1X_MTE-93452736_hg19_LOWStringency.bed \
    data/all_target_segments_not_covered_by_probes_Methyl_UniversityofBristol_lung-cancer-risk-panel_shift100_1X_MTE-93452736_hg19_LOWStringency.bed \
	data/merged_probe_file_shareable_Methyl_UniversityofBristol_lung-cancer-risk-panel_shift100_1X_MTE-93452736_hg19_LOWStringency.bed \
	output/stats.rmd

Output is here: output/stats.md