_pkgdown.yml

destination: docs

authors:
  Yi Liu:
    href: https://yiliu6240.github.io
  Marina Vabistsevits:
    href: https://marinalearning.netlify.com
  Tom Gaunt:
    href: http://www.biocompute.org.uk/
  MRC IEU:
    href: https://mrcieu.github.io/

navbar:
  title: "epigraphdb"
  type: inverse
  left:
    - text: "Home"
      href: index.html
    - text: "Reference"
      href: "reference/index.html"
    - text: "Articles"
      menu:
      - text: "Articles"
        href: articles/index.html
      - text: "About EpiGraphDB"
        href: "articles/about.html"
      - text: "Getting started with EpiGraphDB in R"
        href: "articles/getting-started-with-epigraphdb-r.html"
      - text: "Using R package"
        href: articles/using-epigraphdb-r-package.html
      - text: "Meta functionalities of the EpiGraphDB platform"
        href: "articles/meta-functionalities.html"
      - text: "Using API"
        href: articles/using-epigraphdb-api.html
      - text: "Options"
        href: "articles/options.html"
      - text: "(on EpiGraphDB docs) Case study 1: Distinguishing vertical and horizontal pleiotropy for SNP-protein associations"
        href: "https://docs.epigraphdb.org/r-package/case-1-pleiotropy/"
      - text: "(on EpiGraphDB docs) Case study 2: Identification of potential drug targets"
        href: "https://docs.epigraphdb.org/r-package/case-2-alt-drug-target/"
      - text: "(on EpiGraphDB docs) Case study 3: Triangulating causal estimates with literature evidence"
        href: "https://docs.epigraphdb.org/r-package/case-3-literature-triangulation/"
    - text: "CHANGELOG"
      href: "news/index.html"
  right:
    - icon: fa-github
      href: https://github.com/MRCIEU/epigraphdb-r

reference:
  - title: General query
    contents:
      - query_epigraphdb
  - title: Topic queries
    contents:
      - confounder
      - drugs_risk_factors
      - genetic_cor
      - literature_gwas
      - mr
      - obs_cor
      - ontology_gwas_efo
      - pathway
      - pqtl
      - pqtl_list
      - pqtl_pleio
      - xqtl_multi_snp_mr
      - xqtl_single_snp_mr
      - protein_in_pathway
  - title: Utilities
    contents:
      - mappings_gene_to_protein
      - meta_nodes_list
      - meta_rels_list
      - meta_nodes_list_node
      - meta_rels_list_rel
      - meta_nodes_search_node
      - cypher