Deployment
- Opengwas-api https://github.com/MRCIEU/opengwas-api
- https://ieugit-scmv-d0.epi.bris.ac.uk/ml18692/opengwas-api-internal
- https://ieugit-scmv-d0.epi.bris.ac.uk/cmtsa/ieu-gwas-database
- Elasticsearch database stuff
Data management
- https://github.com/MRCIEU/opengwas-manual-uploads
- https://github.com/MRCIEU/igd-elasticsearch / https://github.com/MRCIEU/OpenGWAS-Elasticsearch-HPC
- https://github.com/MRCIEU/gwas2vcf
- https://github.com/MRCIEU/gwas2vcfweb
- https://github.com/MRCIEU/gwas_processing
- https://github.com/MRCIEU/opengwas-requests
- https://github.com/MRCIEU/opengwas-reports
- https://github.com/MRCIEU/GwasDataImport
- https://ieugit-scmv-d0.epi.bris.ac.uk/gh13047/igd-metadata
- https://github.com/MRCIEU/CheckSumStats
- https://github.com/MRCIEU/IGD-elasticsearch
- https://github.com/MRCIEU/gwas-vcf-specification
- https://github.com/MRCIEU/gwas_processing
Data access
- https://github.com/MRCIEU/ieugwasr
- https://github.com/MRCIEU/ieugwaspy
- https://github.com/MRCIEU/pygwasvcf
- https://github.com/MRCIEU/gwasvcf
Analytical tools
- https://github.com/MRCIEU/gwasglue
- https://github.com/MRCIEU/TwoSampleMR
- https://github.com/MRCIEU/mr-base-shiny
Applied
- mr-eve
- coloc-eve
Analytics
- OCI elastic/Kibana
ssh -f -N -L 5602:132.226.129.208:5601 ieu-db-interface.epi.bris.ac.ukand then open http://localhost:5602 - MR-Base shiny on google analytics - https://analytics.google.com/analytics/web/#/report-home/a64755036w117456758p122852687
- gwas.mrcieu.ac.uk on google analytics - https://analytics.google.com/analytics/web/#/report-home/a143778740w205196691p198413597