From 125dccddc06a2b4dcc0f770649d17b1ec6f2737c Mon Sep 17 00:00:00 2001 From: michael rodwell Date: Mon, 25 Sep 2023 09:20:34 +0100 Subject: [PATCH] added test for large dataset, then delete file --- cypress/integration/large-dataset.js | 251 +++++++++++++++++++++++++++ 1 file changed, 251 insertions(+) create mode 100644 cypress/integration/large-dataset.js diff --git a/cypress/integration/large-dataset.js b/cypress/integration/large-dataset.js new file mode 100644 index 00000000..d3b6c3c7 --- /dev/null +++ b/cypress/integration/large-dataset.js @@ -0,0 +1,251 @@ +describe('Login, upload and do a search using large dataset including selecting items from the tree, then delete.', () => { + + beforeEach(() => { + cy.visit('/'); + cy.viewport(1920, 1080) + }); + + it('Lets login, go to results page, check its empty then try to upload an abstract file', () => { + cy.visit('/logout'); + cy.visit('/'); + cy.get('#side-menu') + .contains('Login') + .click() + cy.get('title') + .invoke('text') + .should('equal', 'TeMMPo: Login') + + cy.get('#id_username').type(Cypress.env('CREDENTIALS_USR')); + cy.get('#id_password').type(Cypress.env('CREDENTIALS_PSW')); + cy.get('button[type=submit]').click() + + cy.get('title') + .invoke('text') + .should('equal', 'TeMMPo: My list') + + // goto results tab and check its empty + + cy.get('#side-menu') + .contains('Results') + .click() + + cy.get('.page-header') + .should('have.text', 'Results') + + cy.get('table') + .find('tr') + .eq(1) + .contains('No data available in table', { matchCase: false }) + + // lets go to the search page try to upload an ovid medline abstract file + + cy.get('.controls') + .find('a.btn.btn-default') + .contains('New search', { matchCase: false }) + .click() + + cy.get('title') + .invoke('text') + .should('equal', 'TeMMPo: Search') + + cy.get('.form-group') + .find('a.btn.btn-primary') + .eq(0) + .contains('Upload OVID MEDLINE® formatted abstracts', { matchCase: false }) + .click() + + // Goes to the ovid medline abstract file upload page + + cy.get('title') + .invoke('text') + .should('equal', 'TeMMPo: Search Ovid MEDLINE®') + + cy.get('input[type=file]') + .selectFile('tests/test-abstract-ovid-test-sample-5.txt') + + cy.get('#upload_button') + .contains('Upload', { matchCase: false }) + .click() + + // We should be on the Select exposure MeSH® terms page + + cy.get('title') + .invoke('text') + .should('equal', 'TeMMPo: Select exposure MeSH® terms') + + // Lets add some exposure terms in the textarea, click add, then move on to mediators + + cy.get('#term_names').type('Public Health Systems Research;Humans'); + + cy.contains('Add', { matchCase: false }) + .click() + + // Lets tick some exposure terms in the checkbox tree + + cy.get('a') + .contains('Anatomy', { matchCase: false }) + .click() + + cy.contains('Save and move on to select mediators', { matchCase: false }) + .click() + + // We should be on the Select mediator MeSH® terms page + + cy.get('title') + .invoke('text') + .should('equal', 'TeMMPo: Select mediator MeSH® terms') + + // Lets add terms in the textarea, click add, then move on to outcomes + + cy.get('#term_names').type('Genetic Markers; Penetrance'); + + cy.contains('Add', { matchCase: false }) + .click() + + // add some more terms from the checkbox tree + + cy.get('a') + .contains('Information Science', { matchCase: false }) + .click() + + cy.contains('Save and move on to select outcomes', { matchCase: false }) + .click() + + // We should be on the Select outcome MeSH® terms page + + cy.get('title') + .invoke('text') + .should('equal', 'TeMMPo: Select outcome MeSH® terms') + + // Lets add outcome term in the textarea, click add, move on to genes + + cy.get('#term_names').type('Neoplasm Metastasis;Eryptosis'); + + cy.contains('Add', { matchCase: false }) + .click() + + // Lets tick an outcome term in the checkbox + + cy.get('a') + .contains('Named Groups', { matchCase: false }) + .click() + + cy.contains('Save and move on to select Genes and Filters', { matchCase: false }) + .click() + + // We should be on the Select genes and filter page + + cy.get('title') + .invoke('text') + .should('equal', 'TeMMPo: Select genes and filter') + + // click the button to continue and get some results + + cy.get('button.btn.btn-primary') + .contains('Search', { matchCase: false }) + .click() + + // We should be on the my list of Results page + + cy.get('title') + .invoke('text') + .should('equal', 'TeMMPo: My list') + + // get the table and check it has the uploaded text file listed + + cy.get('table') + .eq(0) + .find('tr') + .eq(1) + .should('not.be.empty') + + // now we are gonna wait a minute... + + cy.wait(60000) + + // reload the page + + cy.reload() + + // this is where we will do the visualiations... + + + // select sankey chart + + cy.get('tbody') + .contains('View Sankey diagram') + .click() + + + // check sankey chart contains human....etc + + cy.get('#sankey_multiple') + .should('include.text', 'Humans') + .and('include.text', 'Genetic Markers') + .and('include.text', 'Public Health Systems Research') + + + // go back to results tab + + cy.get('#side-menu') + .contains('Results') + .click() + + cy.get('.page-header') + .should('have.text', 'Results') + + // select bubble chart + + cy.get('tbody') + .contains('View bubble chart') + .click() + + // should contain Genetic Markers on the page + + cy.get('#bubble_chart') + .should('include.text', 'Genetic Markers') + + + // thats the end of visualiations test, now lets delete the file we uploaded... + + // goto results tab... + + cy.get('#side-menu') + .contains('Results') + .click() + + cy.get('.page-header') + .should('have.text', 'Results') + + // find and click the delete button + + cy.get('.controls') + .find('a.btn.btn-danger.btn-sm') + .contains('Delete', { matchCase: false }) + .click({force:true}) + + // now check we go the the delete search page + + cy.get('title') + .invoke('text') + .should('equal', 'TeMMPo: Delete search') + + // find the delete search button and click it + + cy.get('input.btn.btn-danger') + .contains('Delete search', { matchCase: false }) + .click({force:true}) + + // now were redirected to the results page with an alert saying Search results deleted + + cy.get('title') + .invoke('text') + .should('equal', 'TeMMPo: My list') + + cy.get('.info') + .contains('Search results deleted', { matchCase: false }) + + + }) + +}); 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