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Mirao52e.cpp
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Mirao52e.cpp
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///////////////////////////////////////////////////////////////////////////////
// FILE: Mirao52e.cpp
// PROJECT: Micro-Manager
// SUBSYSTEM: DeviceAdapters
//-----------------------------------------------------------------------------
// DESCRIPTION: Device adapter for MICAO-52E deformable mirror
//
// AUTHOR: Marijn Siemons 27-02-2018
#include "Mirao52e.h"
#include "windows.h"
#include<cstdlib>
#include<cstring>
#include<string>
#include <sstream>
#include <sys/stat.h>
#include "../../MMDevice/ModuleInterface.h"
#include "../../MMDevice/MMDevice.h"
#include "../../MMDevice/DeviceBase.h"
#include "Mirror.hpp"
#include "Model.h"
#include "PhaseDiversity.h"
#include "3NAlgorithm.h"
#include "merit_functions.hpp"
#include "conversion.hpp"
#define IMPORT_IMOP_WAVEKITBIO_FROM_LIBRARY
#define NOMINMAX
const char* g_DMname = "MIRAO52E";
const char* g_DMfakename = "MIRAO52E_FAKE";
const char* g_SetCalibration = "Set calibration path";
const char* g_SetCalibrationParams = "Set calibration params path";
const char* g_SetDiversityPref = "Set diversity preferences path";
const char* g_LoadWavefront = "Load wavefront";
const char* g_SaveCurrentPosition = "Save current position [input filename]";
const char* g_fakemirrorinit_path = "MIRAO/init/Fake_Mirao52-e_0219.dat";
//const char* g_mirrorinit_path = "MIRAO/init/WaveFrontCorrector_Mirao52-e_0235.dat";
const char* g_mirrorinit_path = "MIRAO/init/MIRAO_initialization.dat";
const char* g_calib_initpath = "MIRAO/init/MIRAO_calibration.aomi";
const char* g_calibparams_initpath = "MIRAO/init/Diversity_calibration.xml";
const char* g_divpref_initpath = "MIRAO/init/Diversity_prefs.xml";
const char* g_wfc_initpath = "MIRAO/init/WavefrontCorrection.wcs";
const char* g_savepath = "MIRAO/WavefrontCorrection_save.wcs";
const char* g_ApplyZernmodes = "ApplyZernikes";
const char* g_SetZernMode_Tip = "Z11";
const char* g_SetZernMode_Tilt = "Z1-1";
const char* g_SetZernMode_Defocus = "Z20";
const char* g_SetZernMode_Astig0deg = "Z22";
const char* g_SetZernMode_Astig45deg = "Z2-2";
const char* g_SetZernMode_Coma0deg = "Z31";
const char* g_SetZernMode_Coma90deg = "Z3-1";
const char* g_SetZernMode_PrimSpherical = "Z40";
const char* g_SetZernMode_Trefoil0deg = "Z33";
const char* g_SetZernMode_Trefoil90deg = "Z3-3";
const char* g_SetZernMode_SecondAstig0deg = "Z42";
const char* g_SetZernMode_SecondAstig45deg = "Z4-2";
const char* g_SetZernMode_Quadrafoil0deg = "Z44";
const char* g_SetZernMode_Quadrafoil45deg = "Z4-4";
const char* g_SetZernMode_SecondComa0deg = "Z51";
const char* g_SetZernMode_SecondComa90deg = "Z5-1";
const char* g_SetZernMode_SecondTrefoil0deg = "Z53";
const char* g_SetZernMode_SecondTrefoil90deg = "Z5-3";
const char* g_SetZernMode_SecondSpherical = "Z60";
inline bool fileexists (const std::string& name) {
if (FILE *file = fopen(name.c_str(), "r")) {
fclose(file);
return true;
} else {
return false;
}
}
MODULE_API void InitializeModuleData()
{
RegisterDevice(g_DMname, MM::GenericDevice, "Mirao-52e");
RegisterDevice(g_DMfakename, MM::GenericDevice, "Fake Mirao-52e");
}
MODULE_API MM::Device* CreateDevice(const char* deviceName)
{
if (deviceName == 0) return 0;
if (strcmp(deviceName, g_DMname) == 0) return new Mirao52e();
if (strcmp(deviceName, g_DMfakename) == 0) return new Mirao52e_FAKE();
return 0;
}
MODULE_API void DeleteDevice(MM::Device* pDevice)
{
delete pDevice;
}
Mirao52e::Mirao52e() :
port_("Undefined"),
initialized_(false),
mirrorinitpath_(g_mirrorinit_path),
calibpath_(g_calib_initpath),
calibparamspath_(g_calibparams_initpath),
divprefpath_(g_divpref_initpath),
wfcpath_(g_wfc_initpath),
savepath_(g_savepath)
{
InitializeDefaultErrorMessages();
// add custom messages
std::string error_mirrorinit_file = "Mirror initialization file does not exist. Looking for: "; error_mirrorinit_file.append(mirrorinitpath_.c_str());
SetErrorText(ERR_MIRRORINIT_FILE_NONEXIST, error_mirrorinit_file.c_str());
std::string error_divinit_file = "Diversity initialization file does not exist. Looking for: "; error_divinit_file.append(calibpath_.c_str());
SetErrorText(ERR_DIVINIT_FILE_NONEXIST, error_divinit_file.c_str());
std::string error_cal_file = "Calibration parameter file does not exist. Looking for: "; error_cal_file.append(calibparamspath_.c_str());
SetErrorText(ERR_CAL_FILE_NONEXIST, error_cal_file.c_str());
std::string error_divpref_file = "Diversity preferences file does not exist. Looking for: "; error_divpref_file.append(divprefpath_.c_str());
SetErrorText(ERR_DIVPREF_FILE_NONEXIST, error_divpref_file.c_str());
SetErrorText(ERR_FILE_NONEXIST, "File does not exist");
// create pre-initialization properties
// ------------------------------------
// Name
CreateProperty(MM::g_Keyword_Name, g_DMname, MM::String, true);
// Description
CreateProperty(MM::g_Keyword_Description, "MIRAO-52E device adapter", MM::String, true);
// Port
CPropertyAction* pAct = new CPropertyAction (this, &Mirao52e::OnPort);
CreateProperty(MM::g_Keyword_Port, "Undefined", MM::String, false, pAct, true);
}
Mirao52e::~Mirao52e()
{
if (initialized_)
Shutdown();
}
bool Mirao52e::Busy()
{
return false;
}
void Mirao52e::GetName(char* name) const
{
CDeviceUtils::CopyLimitedString(name, g_DMname);
}
// General utility function:
int ClearPort(MM::Device& device, MM::Core& core, std::string port)
{
// Clear contents of serial port
const int bufSize = 255;
unsigned char clear[bufSize];
unsigned long read = bufSize;
int ret;
while (read == (unsigned) bufSize)
{
ret = core.ReadFromSerial(&device, port.c_str(), clear, bufSize, read);
if (ret != DEVICE_OK)
return ret;
}
return DEVICE_OK;
}
// initialize function
int Mirao52e::Initialize()
{
if (initialized_)
return DEVICE_OK;
//Check if mirror initialization files exist
if (!fileexists(mirrorinitpath_))
{
return ERR_MIRRORINIT_FILE_NONEXIST;
}
else if(!fileexists(calibpath_))
{
return ERR_DIVINIT_FILE_NONEXIST;
}
else if(!fileexists(calibparamspath_))
{
return ERR_CAL_FILE_NONEXIST;
}
else if(!fileexists(divprefpath_))
{
return ERR_DIVPREF_FILE_NONEXIST;
}
//init Mirror HW driver
mirrorhandle = new imop::microscopy::Mirror(g_mirrorinit_path);
mirrorhandle->init_hardware();
//Load calibration file
diversityhandle = new imop::microscopy::Diversity(calibpath_, *mirrorhandle );
calibparamshandle = new imop::microscopy::CalibrationParams;
calibparamshandle->Load(calibparamspath_);
divprefshandle = new imop::microscopy::DiversityPreferences;
divprefshandle->Load(divprefpath_);
diversityhandle->Init_Diversity(*calibparamshandle,*divprefshandle);
//Apply initial wavefront correction if WFC file exists
if (fileexists(g_wfc_initpath))
{
Mirao52e::LoadWavefront(g_wfc_initpath);
}
// Create action properties
CPropertyAction* pAct = new CPropertyAction(this, &Mirao52e::OnSetCalibration);
int ret = CreateProperty(g_SetCalibration, g_calib_initpath, MM::String, false, pAct);
if (ret!=DEVICE_OK)
return ret;
pAct = new CPropertyAction(this, &Mirao52e::OnSetCalibrationParams);
ret = CreateProperty(g_SetCalibrationParams, g_calibparams_initpath, MM::String, false, pAct);
if (ret!=DEVICE_OK)
return ret;
pAct = new CPropertyAction(this, &Mirao52e::OnSetDiversityPref);
ret = CreateProperty(g_SetDiversityPref, g_divpref_initpath, MM::String, false, pAct);
if (ret!=DEVICE_OK)
return ret;
pAct = new CPropertyAction(this, &Mirao52e::OnLoadWavefront);
ret = CreateProperty(g_LoadWavefront, g_wfc_initpath, MM::String, false, pAct);
if (ret!=DEVICE_OK)
return ret;
pAct = new CPropertyAction(this, &Mirao52e::OnSaveCurrentPosition);
ret = CreateProperty(g_SaveCurrentPosition, g_savepath, MM::String, false, pAct);
if (ret!=DEVICE_OK)
return ret;
// Zernike Modes
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_Tip);
ret = CreateProperty(g_SetZernMode_Tip, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_Tip, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_Tilt);
ret = CreateProperty(g_SetZernMode_Tilt, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_Tilt, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_Defocus);
ret = CreateProperty(g_SetZernMode_Defocus, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_Defocus, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_Astig0deg);
ret = CreateProperty(g_SetZernMode_Astig0deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_Astig0deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_Astig45deg);
ret = CreateProperty(g_SetZernMode_Astig45deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_Astig45deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_Coma0deg);
ret = CreateProperty(g_SetZernMode_Coma0deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_Coma0deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_Coma90deg);
ret = CreateProperty(g_SetZernMode_Coma90deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_Coma90deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_PrimSpherical);
ret = CreateProperty(g_SetZernMode_PrimSpherical, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_PrimSpherical, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_Trefoil0deg);
ret = CreateProperty(g_SetZernMode_Trefoil0deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_Trefoil0deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_Trefoil90deg);
ret = CreateProperty(g_SetZernMode_Trefoil90deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_Trefoil90deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_SecondAstig0deg);
ret = CreateProperty(g_SetZernMode_SecondAstig0deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_SecondAstig0deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_SecondAstig45deg);
ret = CreateProperty(g_SetZernMode_SecondAstig45deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_SecondAstig45deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_Quadrafoil0deg);
ret = CreateProperty(g_SetZernMode_Quadrafoil0deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_Quadrafoil0deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_Quadrafoil45deg);
ret = CreateProperty(g_SetZernMode_Quadrafoil45deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_Quadrafoil45deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_SecondComa0deg);
ret = CreateProperty(g_SetZernMode_SecondComa0deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_SecondComa0deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_SecondComa90deg);
ret = CreateProperty(g_SetZernMode_SecondComa90deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_SecondComa90deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_SecondTrefoil0deg);
ret = CreateProperty(g_SetZernMode_SecondTrefoil0deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_SecondTrefoil0deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_SecondTrefoil90deg);
ret = CreateProperty(g_SetZernMode_SecondTrefoil90deg, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_SecondTrefoil90deg, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnSetZernMode_SecondSpherical);
ret = CreateProperty(g_SetZernMode_SecondSpherical, "0", MM::Float, false, pAct);
if (ret!=DEVICE_OK)
return ret;
SetPropertyLimits(g_SetZernMode_SecondSpherical, -1, 1);
pAct = new CPropertyAction(this, &Mirao52e::OnApplyZernmodes);
ret = CreateProperty(g_ApplyZernmodes, "0", MM::Integer, false, pAct);
if (ret!=DEVICE_OK)
return ret;
initialized_ = true;
return DEVICE_OK;
}
// Shut down function
int Mirao52e::Shutdown()
{
initialized_ = false;
return DEVICE_OK;
}
int Mirao52e::OnPort(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
pProp->Set(port_.c_str());
}
else if (eAct == MM::AfterSet)
{
if (initialized_)
{
// revert
pProp->Set(port_.c_str());
return ERR_PORT_CHANGE_FORBIDDEN;
}
pProp->Get(port_);
}
return DEVICE_OK;
}
// load new calibration files
int Mirao52e::SetCalibration(const std::string path)
{
if (fileexists(path))
{
calibpath_ = path;
diversityhandle = new imop::microscopy::Diversity(calibpath_, *mirrorhandle);
diversityhandle->Init_Diversity(*calibparamshandle,*divprefshandle);
}
else
{
return ERR_FILE_NONEXIST;
}
return DEVICE_OK;
}
int Mirao52e::SetDiversityPref(const std::string path)
{
if (fileexists(path))
{
divprefpath_ = path;
divprefshandle->Load(divprefpath_);
diversityhandle->Init_Diversity(*calibparamshandle,*divprefshandle);
}
else
{
return ERR_FILE_NONEXIST;
}
return DEVICE_OK;
}
int Mirao52e::SetCalibrationParams(const std::string path)
{
if (fileexists(path))
{
calibparamspath_ = path;
calibparamshandle->Load(calibparamspath_);
diversityhandle->Init_Diversity(*calibparamshandle,*divprefshandle);
}
else
{
return ERR_FILE_NONEXIST;
}
return DEVICE_OK;
}
int Mirao52e::LoadWavefront(std::basic_string<char> path)
{
if (fileexists(path))
{
wfcpath_ = path;
diversityhandle->Apply_Absolute_Commands_From_File(wfcpath_);
zer_store.zernike_coefficients[1] = 0;
zer_store.zernike_coefficients[2] = 0;
zer_store.zernike_coefficients[3] = 0;
zer_store.zernike_coefficients[4] = 0;
zer_store.zernike_coefficients[5] = 0;
zer_store.zernike_coefficients[6] = 0;
zer_store.zernike_coefficients[7] = 0;
zer_store.zernike_coefficients[8] = 0;
zer_store.zernike_coefficients[9] = 0;
zer_store.zernike_coefficients[10] = 0;
zer_store.zernike_coefficients[11] = 0;
zer_store.zernike_coefficients[12] = 0;
zer_store.zernike_coefficients[13] = 0;
zer_store.zernike_coefficients[14] = 0;
zer_store.zernike_coefficients[15] = 0;
zer_store.zernike_coefficients[16] = 0;
zer_store.zernike_coefficients[17] = 0;
zer_store.zernike_coefficients[18] = 0;
zer_store.zernike_coefficients[19] = 0;
zer_rel.zernike_coefficients[1] = 0;
zer_rel.zernike_coefficients[2] = 0;
zer_rel.zernike_coefficients[3] = 0;
zer_rel.zernike_coefficients[4] = 0;
zer_rel.zernike_coefficients[5] = 0;
zer_rel.zernike_coefficients[6] = 0;
zer_rel.zernike_coefficients[7] = 0;
zer_rel.zernike_coefficients[8] = 0;
zer_rel.zernike_coefficients[9] = 0;
zer_rel.zernike_coefficients[10] = 0;
zer_rel.zernike_coefficients[11] = 0;
zer_rel.zernike_coefficients[12] = 0;
zer_rel.zernike_coefficients[13] = 0;
zer_rel.zernike_coefficients[14] = 0;
zer_rel.zernike_coefficients[15] = 0;
zer_rel.zernike_coefficients[16] = 0;
zer_rel.zernike_coefficients[17] = 0;
zer_rel.zernike_coefficients[18] = 0;
zer_rel.zernike_coefficients[19] = 0;
Sleep(10);
}
else
{
return ERR_FILE_NONEXIST;
}
return DEVICE_OK;
}
int Mirao52e::SaveCurrentPosition(std::basic_string<char> path)
{
savepath_ = path;
diversityhandle->Save_Current_Positions_ToFile(savepath_);
return DEVICE_OK;
}
/*
// Get Actuator positions //
int Mirao52e::GetActuatorPos(std::vector<float> pos)
{
pos = mirrorhandle->Get_Current_Position();
return DEVICE_OK;
}
*/
// Set Zernike modes
int Mirao52e::ApplyZernmodes()
{
diversityhandle->Apply_Relative_Commands(zer_rel);
zer_store.zernike_coefficients[1] = zer_store.zernike_coefficients[1] + zer_rel.zernike_coefficients[1];
zer_store.zernike_coefficients[2] = zer_store.zernike_coefficients[2] + zer_rel.zernike_coefficients[2];
zer_store.zernike_coefficients[3] = zer_store.zernike_coefficients[3] + zer_rel.zernike_coefficients[3];
zer_store.zernike_coefficients[4] = zer_store.zernike_coefficients[4] + zer_rel.zernike_coefficients[4];
zer_store.zernike_coefficients[5] = zer_store.zernike_coefficients[5] + zer_rel.zernike_coefficients[5];
zer_store.zernike_coefficients[6] = zer_store.zernike_coefficients[6] + zer_rel.zernike_coefficients[6];
zer_store.zernike_coefficients[7] = zer_store.zernike_coefficients[7] + zer_rel.zernike_coefficients[7];
zer_store.zernike_coefficients[8] = zer_store.zernike_coefficients[8] + zer_rel.zernike_coefficients[8];
zer_store.zernike_coefficients[9] = zer_store.zernike_coefficients[9] + zer_rel.zernike_coefficients[9];
zer_store.zernike_coefficients[10] = zer_store.zernike_coefficients[10] + zer_rel.zernike_coefficients[10];
zer_store.zernike_coefficients[11] = zer_store.zernike_coefficients[11] + zer_rel.zernike_coefficients[11];
zer_store.zernike_coefficients[12] = zer_store.zernike_coefficients[12] + zer_rel.zernike_coefficients[12];
zer_store.zernike_coefficients[13] = zer_store.zernike_coefficients[13] + zer_rel.zernike_coefficients[13];
zer_store.zernike_coefficients[14] = zer_store.zernike_coefficients[14] + zer_rel.zernike_coefficients[14];
zer_store.zernike_coefficients[15] = zer_store.zernike_coefficients[15] + zer_rel.zernike_coefficients[15];
zer_store.zernike_coefficients[16] = zer_store.zernike_coefficients[16] + zer_rel.zernike_coefficients[16];
zer_store.zernike_coefficients[17] = zer_store.zernike_coefficients[17] + zer_rel.zernike_coefficients[17];
zer_store.zernike_coefficients[18] = zer_store.zernike_coefficients[18] + zer_rel.zernike_coefficients[18];
zer_store.zernike_coefficients[19] = zer_store.zernike_coefficients[19] + zer_rel.zernike_coefficients[19];
zer_rel.zernike_coefficients[1] = 0;
zer_rel.zernike_coefficients[2] = 0;
zer_rel.zernike_coefficients[3] = 0;
zer_rel.zernike_coefficients[4] = 0;
zer_rel.zernike_coefficients[5] = 0;
zer_rel.zernike_coefficients[6] = 0;
zer_rel.zernike_coefficients[7] = 0;
zer_rel.zernike_coefficients[8] = 0;
zer_rel.zernike_coefficients[9] = 0;
zer_rel.zernike_coefficients[10] = 0;
zer_rel.zernike_coefficients[11] = 0;
zer_rel.zernike_coefficients[12] = 0;
zer_rel.zernike_coefficients[13] = 0;
zer_rel.zernike_coefficients[14] = 0;
zer_rel.zernike_coefficients[15] = 0;
zer_rel.zernike_coefficients[16] = 0;
zer_rel.zernike_coefficients[17] = 0;
zer_rel.zernike_coefficients[18] = 0;
zer_rel.zernike_coefficients[19] = 0;
Sleep(10);
return DEVICE_OK;
}
int Mirao52e::SetZernMode_Tip(float Acoef)
{
zer_rel.zernike_coefficients[1] = Acoef - zer_store.zernike_coefficients[1];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_Tilt(float Acoef)
{
zer_rel.zernike_coefficients[2] = Acoef - zer_store.zernike_coefficients[2];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_Defocus(float Acoef)
{
zer_rel.zernike_coefficients[3] = Acoef - zer_store.zernike_coefficients[3];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_Astig0deg(float Acoef)
{
zer_rel.zernike_coefficients[4] = Acoef - zer_store.zernike_coefficients[4];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_Astig45deg(float Acoef)
{
zer_rel.zernike_coefficients[5] = Acoef - zer_store.zernike_coefficients[5];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_Coma0deg(float Acoef)
{
zer_rel.zernike_coefficients[6] = Acoef - zer_store.zernike_coefficients[6];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_Coma90deg(float Acoef)
{
zer_rel.zernike_coefficients[7] = Acoef - zer_store.zernike_coefficients[7];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_PrimSpherical(float Acoef)
{
zer_rel.zernike_coefficients[8] = Acoef - zer_store.zernike_coefficients[8];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_Trefoil0deg(float Acoef)
{
zer_rel.zernike_coefficients[9] = Acoef - zer_store.zernike_coefficients[9];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_Trefoil90deg(float Acoef)
{
zer_rel.zernike_coefficients[10] = Acoef - zer_store.zernike_coefficients[10];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_SecondAstig0deg(float Acoef)
{
zer_rel.zernike_coefficients[11] = Acoef - zer_store.zernike_coefficients[11];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_SecondAstig45deg(float Acoef)
{
zer_rel.zernike_coefficients[12] = Acoef - zer_store.zernike_coefficients[12];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_SecondComa0deg(float Acoef)
{
zer_rel.zernike_coefficients[13] = Acoef - zer_store.zernike_coefficients[13];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_SecondComa90deg(float Acoef)
{
zer_rel.zernike_coefficients[14] = Acoef - zer_store.zernike_coefficients[14];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_SecondSpherical(float Acoef)
{
zer_rel.zernike_coefficients[15] = Acoef - zer_store.zernike_coefficients[15];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_Quadrafoil0deg(float Acoef)
{
zer_rel.zernike_coefficients[16] = Acoef - zer_store.zernike_coefficients[16];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_Quadrafoil45deg(float Acoef)
{
zer_rel.zernike_coefficients[17] = Acoef - zer_store.zernike_coefficients[17];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_SecondTrefoil0deg(float Acoef)
{
zer_rel.zernike_coefficients[18] = Acoef - zer_store.zernike_coefficients[18];
return DEVICE_OK;
}
int Mirao52e::SetZernMode_SecondTrefoil90deg(float Acoef)
{
zer_rel.zernike_coefficients[19] = Acoef - zer_store.zernike_coefficients[19];
return DEVICE_OK;
}
///////////////////////////////////////////////////////////////////////////////
// Action handlers
// Handle changes and updates to property values.
///////////////////////////////////////////////////////////////////////////////
int Mirao52e::OnSetCalibration(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
pProp->Set(calibpath_.c_str());
}
else if (eAct == MM::AfterSet)
{
std::basic_string<char> path;;
pProp->Get(path);
return SetCalibration(path);
}
return DEVICE_OK;
}
int Mirao52e::OnSetCalibrationParams(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
pProp->Set(calibparamspath_.c_str());
}
else if (eAct == MM::AfterSet)
{
std::basic_string<char> path;;
pProp->Get(path);
return SetCalibrationParams(path);
}
return DEVICE_OK;
}
int Mirao52e::OnSetDiversityPref(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
// string val;
pProp->Set(divprefpath_.c_str());
}
else if (eAct == MM::AfterSet)
{
std::basic_string<char> path;;
pProp->Get(path);
return SetDiversityPref(path);
}
return DEVICE_OK;
}
int Mirao52e::OnLoadWavefront(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
pProp->Set(wfcpath_.c_str());
}
else if (eAct == MM::AfterSet)
{
std::basic_string<char> path;;
pProp->Get(path);
return LoadWavefront(path);
}
return DEVICE_OK;
}
int Mirao52e::OnSaveCurrentPosition(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
pProp->Set(savepath_.c_str());
}
else if (eAct == MM::AfterSet)
{
std::basic_string<char> path;;
pProp->Get(path);
return SaveCurrentPosition(path);
}
return DEVICE_OK;
}
// Zernike modes
int Mirao52e::OnApplyZernmodes(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
// pProp->Set(false);
}
else if (eAct == MM::AfterSet)
{
return ApplyZernmodes();
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_Tip(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[1] + zer_rel.zernike_coefficients[1] ;
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)
{
double Acoef;
pProp->Get(Acoef);
return SetZernMode_Tip(Acoef);
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_Tilt(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[2] + zer_rel.zernike_coefficients[2];
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)
{
double Acoef;
pProp->Get(Acoef);
return SetZernMode_Tilt(Acoef);
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_Defocus(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[3] + zer_rel.zernike_coefficients[3];
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)
{
double Acoef;
pProp->Get(Acoef);
return SetZernMode_Defocus(Acoef);
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_Astig0deg(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[4] + zer_rel.zernike_coefficients[4];
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)
{
double Acoef;
pProp->Get(Acoef);
return SetZernMode_Astig0deg(Acoef);
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_Astig45deg(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[5] + zer_rel.zernike_coefficients[5];
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)
{
double Acoef;
pProp->Get(Acoef);
return SetZernMode_Astig45deg(Acoef);
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_Coma0deg(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[6] + zer_rel.zernike_coefficients[6];
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)
{
double Acoef;
pProp->Get(Acoef);
return SetZernMode_Coma0deg(Acoef);
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_Coma90deg(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[7] + zer_rel.zernike_coefficients[7];
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)
{
double Acoef;
pProp->Get(Acoef);
return SetZernMode_Coma90deg(Acoef);
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_PrimSpherical(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[8] + zer_rel.zernike_coefficients[8];
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)
{
double Acoef;
pProp->Get(Acoef);
return SetZernMode_PrimSpherical(Acoef);
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_Trefoil0deg(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[9] + zer_rel.zernike_coefficients[9];
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)
{
double Acoef;
pProp->Get(Acoef);
return SetZernMode_Trefoil0deg(Acoef);
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_Trefoil90deg(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[10] + zer_rel.zernike_coefficients[10];
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)
{
double Acoef;
pProp->Get(Acoef);
return SetZernMode_Trefoil90deg(Acoef);
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_SecondAstig0deg(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[11] + zer_rel.zernike_coefficients[11];
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)
{
double Acoef;
pProp->Get(Acoef);
return SetZernMode_SecondAstig0deg(Acoef);
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_SecondAstig45deg(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[12] + zer_rel.zernike_coefficients[12];
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)
{
double Acoef;
pProp->Get(Acoef);
return SetZernMode_SecondAstig45deg(Acoef);
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_SecondComa0deg(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[13] + zer_rel.zernike_coefficients[13];
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)
{
double Acoef;
pProp->Get(Acoef);
return SetZernMode_SecondComa0deg(Acoef);
}
return DEVICE_OK;
}
int Mirao52e::OnSetZernMode_SecondComa90deg(MM::PropertyBase* pProp, MM::ActionType eAct)
{
if (eAct == MM::BeforeGet)
{
double Acoef;
Acoef = zer_store.zernike_coefficients[14] + zer_rel.zernike_coefficients[14];
pProp->Set(Acoef);
}
else if (eAct == MM::AfterSet)