[scRNA_seq]: Skip rug plots for missing cell type libraries

MaayanLab · Jul 3, 2024 · f1b9da1 · f1b9da1
1 parent 3c63efc
commit f1b9da1
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/appyters/scRNA_seq/appyter.json b/appyters/scRNA_seq/appyter.json
@@ -2,7 +2,7 @@
   "$schema": "https://raw.githubusercontent.com/MaayanLab/appyter-catalog/main/schema/appyter-validator.json",
   "name": "scRNA_seq",
   "title": "Single cell RNA-seq analysis pipeline",
-  "version": "0.2.6",
+  "version": "0.2.7",
   "description": "scRNA-seq analysis pipeline enables users to analyze and visualize scRNA-seq datasets with state-of-the-art algorithms and visualization methods.",
   "image": "screenshot.png",
   "authors": [

diff --git a/appyters/scRNA_seq/utils.py b/appyters/scRNA_seq/utils.py
@@ -1134,6 +1134,7 @@ def plot_protrack(libraries, tmp_adata, bool_plot_rug=True, bool_plot_dendrogram
             adata_heatmap.obs = adata_heatmap.obs.T.drop_duplicates().T
             new_library_filename = extract_library_name(library_filename)
             library_name = library_filename+"_0"
+            if library_name not in adata_heatmap.obs.columns: continue
             clean_library_filename = {library_name: new_library_filename}
             new_cols = list()
             for col in adata_heatmap.obs.columns: