e2e_testing.yml

on:
  pull_request:
    types: [ labeled ]
  push:
    branches: [ main, development ]
  workflow_dispatch:

name: End to end testing

jobs:
  end2end_testing:
    name: End to end test
    runs-on: self-hosted
    if: contains(github.event.pull_request.labels.*.name, 'test:e2e') || github.event_name == 'push' || github.event_name == 'workflow_dispatch'
    strategy:
      matrix:
        # test case name as defined in e2e_test_cases.yaml
        test_case: [ "basic", "synchropasef", "astral", "astral_automatic_calibration", ]
    env:
      RUN_NAME: alphadia-${{github.sha}}-${{github.run_id}}-${{github.run_attempt}}
      BRANCH_NAME: ${{ github.head_ref || github.ref_name }}
      NEPTUNE_API_TOKEN: ${{ secrets.NEPTUNE_E2E_TOKEN }}
      NEPTUNE_PROJECT_NAME: "MannLabs/alphaDIA-e2e-tests"
      NUMBA_BOUNDSCHECK: 1
      NUMBA_DEVELOPER_MODE: 1
      NUMBA_FULL_TRACEBACKS: 1
      TQDM_MININTERVAL: 10  # avoid lots of tqdm outputs
    steps:
      - uses: actions/checkout@v4
      - name: Conda info
        shell: bash -el {0}
        run: conda info
      - name: Pip installation with stable dependencies
        id: pip_installation
        shell: bash -el {0}
        run: |
          cd misc
          . ./pip_install.sh stable $RUN_NAME
      - name: Run e2e tests
        shell: bash -el {0}
        run: |
          cd tests
           . ./run_e2e_tests.sh ${{ matrix.test_case }} $RUN_NAME True ${GITHUB_SHA::7} $BRANCH_NAME
      - name: Cleanup
        if: always()
        shell: bash -el {0}
        run: |
          conda remove -n $RUN_NAME --all -y
      - name: Delete Caches on Error
        if: ${{ failure() && steps.pip_installation.conclusion == 'failure' }}
        run: |
          rm -rf ~/.cache/pip
          rm -rf ~/.cache/conda