Bump version: 1.7.2 → 1.8.0

MannLabs · Sep 11, 2024 · 90912b9 · 90912b9
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commit 90912b9
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Showing 17 changed files with 25 additions and 26 deletions.
diff --git a/alphadia/__init__.py b/alphadia/__init__.py
@@ -1,3 +1,3 @@
 #!python
 
-__version__ = "1.7.2"
+__version__ = "1.8.0"
diff --git a/docs/index.md b/docs/index.md
@@ -1,6 +1,6 @@
 
 # AlphaDIA Documentation
-**Version:** 1.7.2 | [Github](https://github.com/MannLabs/alphadia)
+**Version:** 1.8.0 | [Github](https://github.com/MannLabs/alphadia)
 
 Open-source DIA search engine built with the alphaX ecosystem. Built with [alpharaw](https://github.com/MannLabs/alpharaw) and [alphatims](https://github.com/MannLabs/alphatims) for raw file acces. Spectral libraries are predicted with [peptdeep](https://github.com/MannLabs/alphapeptdeep) and managed by [alphabase](https://github.com/MannLabs/alphabase). Quantification is powered by [directLFQ](https://github.com/MannLabs/directLFQ).
 

diff --git a/gui/package.json b/gui/package.json
@@ -1,7 +1,7 @@
 {
   "name": "alphadia",
   "productName": "alphadia-gui",
-  "version": "1.7.2",
+  "version": "1.8.0",
   "description": "Graphical user interface for DIA data analysis",
   "main": "dist/electron.js",
   "homepage": "./",

diff --git a/gui/src/main/modules/profile.js b/gui/src/main/modules/profile.js
@@ -3,7 +3,7 @@ const path = require("path")
 const { app, shell, BrowserWindow} = require("electron")
 const { dialog } = require('electron')
 
-const VERSION = "1.7.2"
+const VERSION = "1.8.0"
 
 const Profile = class {
 

diff --git a/misc/.bumpversion.cfg b/misc/.bumpversion.cfg
@@ -1,9 +1,9 @@
 [bumpversion]
-current_version = 1.7.2
+current_version = 1.8.0
 commit = True
 tag = True
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\-(?P<release>[a-z]+)(?P<build>\d+))?
-serialize =
+serialize = 
 	{major}.{minor}.{patch}
 	{major}.{minor}.{patch}
 
@@ -29,19 +29,18 @@ serialize =
 
 [bumpversion:file:../release/macos/build_package_macos.sh]
 
-[bumpversion:file:../release/macos/build_backend_macos.sh] # TODO remove with old release workflow
+[bumpversion:file:../release/macos/build_backend_macos.sh]
 
-[bumpversion:file:../release/macos/build_pkg_macos.sh] # TODO remove with old release workflow
+[bumpversion:file:../release/macos/build_pkg_macos.sh]
 
 [bumpversion:file:../release/macos/distribution.xml]
 
 [bumpversion:file:../release/windows/alphadia_innoinstaller.iss]
 
-[bumpversion:file:../release/windows/alphadia_innoinstaller_old.iss] # TODO remove with old release workflow
+[bumpversion:file:../release/windows/alphadia_innoinstaller_old.iss]
 
 [bumpversion:file:../release/windows/build_installer_windows.ps1]
 
-[bumpversion:file:../release/windows/build_backend.ps1] # TODO remove with old release workflow
-
+[bumpversion:file:../release/windows/build_backend.ps1]
 search = {current_version}
 replace = {new_version}
diff --git a/release/linux/build_installer_linux.sh b/release/linux/build_installer_linux.sh
@@ -10,7 +10,7 @@ rm -rf dist build *.egg-info
 rm -rf dist_pyinstaller build_pyinstaller
 
 python -m build
-pip install "dist/alphadia-1.7.2-py3-none-any.whl[stable]"
+pip install "dist/alphadia-1.8.0-py3-none-any.whl[stable]"
 
 if [ "${CPU_OR_GPU}" != "GPU" ]; then
     pip install torch -U --extra-index-url https://download.pytorch.org/whl/cpu

diff --git a/release/linux/control b/release/linux/control
@@ -1,5 +1,5 @@
 Package: alphadia
-Version: 1.7.2
+Version: 1.8.0
 Architecture: all
 Maintainer: Mann Labs <opensource@alphapept.com>
 Description: alphadia

diff --git a/release/macos/build_backend_macos.sh b/release/macos/build_backend_macos.sh
@@ -3,7 +3,7 @@
 # navigate to the root directory
 
 python -m build
-pip install "dist/alphadia-1.7.2-py3-none-any.whl[stable]"
+pip install "dist/alphadia-1.8.0-py3-none-any.whl[stable]"
 
 # Creating the stand-alone pyinstaller folder
 pip install pyinstaller

diff --git a/release/macos/build_installer_macos.sh b/release/macos/build_installer_macos.sh
@@ -10,7 +10,7 @@ rm -rf dist_pyinstaller build_pyinstaller
 export EAGER_IMPORT=true  # TODO check if this can be removed with newset peptdeep version w/out transformer dependenc
 
 python -m build
-pip install "dist/alphadia-1.7.2-py3-none-any.whl[stable]"
+pip install "dist/alphadia-1.8.0-py3-none-any.whl[stable]"
 
 # Creating the stand-alone pyinstaller folder
 pyinstaller release/pyinstaller/alphadia.spec --distpath dist_pyinstaller --workpath build_pyinstaller -y
diff --git a/release/macos/build_package_macos.sh b/release/macos/build_package_macos.sh
@@ -7,10 +7,10 @@ set -e -u
 # Set up package name and version
 PACKAGE_NAME="alphadia"
 APP_NAME="alphadia"
-PACKAGE_VERSION="1.7.2"
+PACKAGE_VERSION="1.8.0"
 PKG_FOLDER="dist/$APP_NAME.app"
 
-# BUILD_NAME is taken from environment variables, e.g. alphadia-1.7.2-macos-darwin-arm64 or alphadia-1.7.2-macos-darwin-x64
+# BUILD_NAME is taken from environment variables, e.g. alphadia-1.8.0-macos-darwin-arm64 or alphadia-1.8.0-macos-darwin-x64
 rm -rf ${BUILD_NAME}.pkg
 
 # Cleanup the package folder

diff --git a/release/macos/build_pkg_macos.sh b/release/macos/build_pkg_macos.sh
@@ -3,7 +3,7 @@
 
 # Set up package name and version
 PACKAGE_NAME="alphadia"
-PACKAGE_VERSION="1.7.2"
+PACKAGE_VERSION="1.8.0"
 
 ARCH=$(uname -m)
 if [ "$ARCH" == "x86_64" ]; then

diff --git a/release/macos/distribution.xml b/release/macos/distribution.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="utf-8" standalone="no"?>
 <installer-script minSpecVersion="1.000000">
-    <title>AlphaDIA 1.7.2</title>
+    <title>AlphaDIA 1.8.0</title>
     <background mime-type="image/png" file="alphadia.png" scaling="proportional"/>
     <welcome file="welcome.html" mime-type="text/html" />
     <conclusion file="conclusion.html" mime-type="text/html" />

diff --git a/release/macos/info.plist b/release/macos/info.plist
@@ -9,9 +9,9 @@
 	<key>CFBundleIconFile</key>
 	<string>alphadia.icns</string>
 	<key>CFBundleIdentifier</key>
-	<string>alphadia.1.7.2</string>
+	<string>alphadia.1.8.0</string>
 	<key>CFBundleShortVersionString</key>
-	<string>1.7.2</string>
+	<string>1.8.0</string>
 	<key>CFBundleInfoDictionaryVersion</key>
 	<string>6.0</string>
 	<key>CFBundleName</key>

diff --git a/release/windows/alphadia_innoinstaller.iss b/release/windows/alphadia_innoinstaller.iss
@@ -5,7 +5,7 @@
 ; so all paths are given relative to the location of this .iss file.
 
 #define MyAppName "AlphaDIA"
-#define MyAppVersion "1.7.2"
+#define MyAppVersion "1.8.0"
 #define MyAppPublisher "Max Planck Institute of Biochemistry, Mann Labs"
 #define MyAppURL "https://github.com/MannLabs/alphadia"
 #define MyAppExeName "alphadia-gui.exe"
@@ -29,7 +29,7 @@ PrivilegesRequired=lowest
 PrivilegesRequiredOverridesAllowed=dialog
 ; release workflow expects artifact at root of repository
 OutputDir=..\..\
-; example for BUILD_NAME: alphadia-1.7.2-win-x64
+; example for BUILD_NAME: alphadia-1.8.0-win-x64
 OutputBaseFilename={#GetEnv('BUILD_NAME')}
 SetupIconFile=..\logos\alphadia.ico
 Compression=lzma

diff --git a/release/windows/alphadia_innoinstaller_old.iss b/release/windows/alphadia_innoinstaller_old.iss
@@ -3,7 +3,7 @@
 ; # TODO remove with old release workflow
 
 #define MyAppName "AlphaDIA"
-#define MyAppVersion "1.7.2"
+#define MyAppVersion "1.8.0"
 #define MyAppPublisher "Max Planck Institute of Biochemistry, Mann Labs"
 #define MyAppURL "https://github.com/MannLabs/alphadia"
 #define MyAppExeName "alphadia-gui.exe"

diff --git a/release/windows/build_backend.ps1 b/release/windows/build_backend.ps1
@@ -5,7 +5,7 @@ Remove-Item -Recurse -Force -ErrorAction SilentlyContinue ./dist
 
 pip install build
 python -m build
-pip install "dist/alphadia-1.7.2-py3-none-any.whl[stable]"
+pip install "dist/alphadia-1.8.0-py3-none-any.whl[stable]"
 
 # Creating the stand-alone pyinstaller folder
 pip install pyinstaller tbb

diff --git a/release/windows/build_installer_windows.ps1 b/release/windows/build_installer_windows.ps1
@@ -5,7 +5,7 @@ Remove-Item -Recurse -Force -ErrorAction SilentlyContinue ./build
 Remove-Item -Recurse -Force -ErrorAction SilentlyContinue ./dist
 
 python -m build
-pip install "dist/alphadia-1.7.2-py3-none-any.whl[stable]"
+pip install "dist/alphadia-1.8.0-py3-none-any.whl[stable]"
 
 # Creating the stand-alone pyinstaller folder
 pip install tbb==2021.13.1