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Remove index column #362

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@mschwoer mschwoer commented Oct 25, 2024

harmonize the input data w.r.t "index_column" to be able to rely on a fixed value throughout the codebase to reduce clutter and passing around arguments.

Will do the same for "gene_names" and "sample" columns.

The only downside is that the internal name is now shown at these places (could be fixed, but a little effort):
image

image

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