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performance_log.txt
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performance_log.txt
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2022-04-06 15:50:59> Platform information:
2022-04-06 15:50:59> system - Darwin
2022-04-06 15:50:59> release - 20.6.0
2022-04-06 15:50:59> version - 10.16
2022-04-06 15:50:59> machine - x86_64
2022-04-06 15:50:59> processor - i386
2022-04-06 15:50:59> cpu count - 8
2022-04-06 15:50:59> cpu frequency - 2300.00 Mhz
2022-04-06 15:50:59> ram - 18.1/32.0 Gb (available/total)
2022-04-06 15:50:59>
2022-04-06 15:50:59> Python information:
2022-04-06 15:50:59> alphatims - 1.0.0
2022-04-06 15:50:59> bokeh - 2.2.3
2022-04-06 15:50:59> click - 8.0.1
2022-04-06 15:50:59> datashader - 0.12.1
2022-04-06 15:50:59> h5py - 3.2.1
2022-04-06 15:50:59> hvplot - 0.7.1
2022-04-06 15:50:59> numba - 0.53.1
2022-04-06 15:50:59> pandas - 1.2.4
2022-04-06 15:50:59> psutil - 5.8.0
2022-04-06 15:50:59> python - 3.8.10
2022-04-06 15:50:59> python-lzf - 0.2.4
2022-04-06 15:50:59> pyzstd - 0.15.0
2022-04-06 15:50:59> selenium - 3.141.0
2022-04-06 15:50:59> tqdm - 4.60.0
2022-04-06 15:50:59>
2022-04-06 15:51:00> WARNING: Temp mmap arrays are written to /var/folders/7c/8c8rlrjd311c65k2fmcnqcgm0000gn/T/temp_mmap_zhdqlbr4. Cleanup of this folder is OS dependant, and might need to be triggered manually!
2022-04-06 15:51:00> WARNING: No Bruker libraries are available for this operating system. Mobility and m/z values need to be estimated. While this estimation often returns acceptable results with errors < 0.02 Th, huge errors (e.g. offsets of 6 Th) have already been observed for some samples!
2022-04-06 15:51:00>
2022-04-06 15:51:00> Initial loading of DDA_6
2022-04-06 15:51:00> Importing data from /Users/swillems/Data/alphatims_testing/20210510_TIMS03_EVO03_PaSk_MA_HeLa_50ng_5_6min_DDA_S1-B1_1_25185.d
2022-04-06 15:51:00> Reading frame metadata for /Users/swillems/Data/alphatims_testing/20210510_TIMS03_EVO03_PaSk_MA_HeLa_50ng_5_6min_DDA_S1-B1_1_25185.d
2022-04-06 15:51:01> Reading 3,156 frames with 143,542,808 detector events for /Users/swillems/Data/alphatims_testing/20210510_TIMS03_EVO03_PaSk_MA_HeLa_50ng_5_6min_DDA_S1-B1_1_25185.d
2022-04-06 15:51:02> Indexing /Users/swillems/Data/alphatims_testing/20210510_TIMS03_EVO03_PaSk_MA_HeLa_50ng_5_6min_DDA_S1-B1_1_25185.d...
2022-04-06 15:51:02> Bruker DLL not available, estimating mobility values
2022-04-06 15:51:02> Bruker DLL not available, estimating mz values
2022-04-06 15:51:02> Indexing quadrupole dimension
2022-04-06 15:51:02> Succesfully imported data from /Users/swillems/Data/alphatims_testing/20210510_TIMS03_EVO03_PaSk_MA_HeLa_50ng_5_6min_DDA_S1-B1_1_25185.d
2022-04-06 15:51:02>
2022-04-06 15:51:02> Initial loading of DIA_6
2022-04-06 15:51:02> Importing data from /Users/swillems/Data/alphatims_testing/20210510_TIMS03_EVO03_PaSk_SA_HeLa_50ng_5_6min_DIA_high_speed_S1-B2_1_25186.d
2022-04-06 15:51:02> Reading frame metadata for /Users/swillems/Data/alphatims_testing/20210510_TIMS03_EVO03_PaSk_SA_HeLa_50ng_5_6min_DIA_high_speed_S1-B2_1_25186.d
2022-04-06 15:51:03> Reading 3,176 frames with 126,982,956 detector events for /Users/swillems/Data/alphatims_testing/20210510_TIMS03_EVO03_PaSk_SA_HeLa_50ng_5_6min_DIA_high_speed_S1-B2_1_25186.d
2022-04-06 15:51:04> Indexing /Users/swillems/Data/alphatims_testing/20210510_TIMS03_EVO03_PaSk_SA_HeLa_50ng_5_6min_DIA_high_speed_S1-B2_1_25186.d...
2022-04-06 15:51:04> Bruker DLL not available, estimating mobility values
2022-04-06 15:51:04> Bruker DLL not available, estimating mz values
2022-04-06 15:51:04> Indexing quadrupole dimension
2022-04-06 15:51:04> Succesfully imported data from /Users/swillems/Data/alphatims_testing/20210510_TIMS03_EVO03_PaSk_SA_HeLa_50ng_5_6min_DIA_high_speed_S1-B2_1_25186.d
2022-04-06 15:51:04>
2022-04-06 15:51:04> Initial loading of DDA_21
2022-04-06 15:51:04> Importing data from /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.d
2022-04-06 15:51:04> Reading frame metadata for /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.d
2022-04-06 15:51:06> Reading 11,886 frames with 295,251,252 detector events for /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.d
2022-04-06 15:51:10> Indexing /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.d...
2022-04-06 15:51:10> Bruker DLL not available, estimating mobility values
2022-04-06 15:51:10> Bruker DLL not available, estimating mz values
2022-04-06 15:51:10> Indexing quadrupole dimension
2022-04-06 15:51:11> Succesfully imported data from /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.d
2022-04-06 15:51:11>
2022-04-06 15:51:11> Initial loading of DIA_21
2022-04-06 15:51:11> Importing data from /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_high_speed_21min_8cm_S1-C8_1_22474.d
2022-04-06 15:51:11> Reading frame metadata for /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_high_speed_21min_8cm_S1-C8_1_22474.d
2022-04-06 15:51:11> Reading 11,868 frames with 730,564,765 detector events for /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_high_speed_21min_8cm_S1-C8_1_22474.d
2022-04-06 15:51:20> Indexing /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_high_speed_21min_8cm_S1-C8_1_22474.d...
2022-04-06 15:51:20> Bruker DLL not available, estimating mobility values
2022-04-06 15:51:20> Bruker DLL not available, estimating mz values
2022-04-06 15:51:20> Indexing quadrupole dimension
2022-04-06 15:51:21> Succesfully imported data from /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_high_speed_21min_8cm_S1-C8_1_22474.d
2022-04-06 15:51:21>
2022-04-06 15:51:21> Initial loading of DDA_120
2022-04-06 15:51:21> Importing data from /Users/swillems/Data/alphatims_testing/20210507_TIMS01_LC01_PaSk_MA_HeLa_400ng_ddaAPSEF_A1_1_7545.d
2022-04-06 15:51:21> Reading frame metadata for /Users/swillems/Data/alphatims_testing/20210507_TIMS01_LC01_PaSk_MA_HeLa_400ng_ddaAPSEF_A1_1_7545.d
2022-04-06 15:51:29> Reading 67,024 frames with 2,736,188,777 detector events for /Users/swillems/Data/alphatims_testing/20210507_TIMS01_LC01_PaSk_MA_HeLa_400ng_ddaAPSEF_A1_1_7545.d
2022-04-06 15:52:13> Indexing /Users/swillems/Data/alphatims_testing/20210507_TIMS01_LC01_PaSk_MA_HeLa_400ng_ddaAPSEF_A1_1_7545.d...
2022-04-06 15:52:13> Bruker DLL not available, estimating mobility values
2022-04-06 15:52:13> Bruker DLL not available, estimating mz values
2022-04-06 15:52:13> Indexing quadrupole dimension
2022-04-06 15:52:19> Succesfully imported data from /Users/swillems/Data/alphatims_testing/20210507_TIMS01_LC01_PaSk_MA_HeLa_400ng_ddaAPSEF_A1_1_7545.d
2022-04-06 15:52:19>
2022-04-06 15:52:19> Initial loading of DIA_120
2022-04-06 15:52:19> Importing data from /Users/swillems/Data/alphatims_testing/20210507_TIMS01_LC01_PaSk_SA_HeLa_400ng_diaPASEF_high_speed_A1_1_7546.d
2022-04-06 15:52:19> Reading frame metadata for /Users/swillems/Data/alphatims_testing/20210507_TIMS01_LC01_PaSk_SA_HeLa_400ng_diaPASEF_high_speed_A1_1_7546.d
2022-04-06 15:52:20> Reading 66,775 frames with 6,364,599,982 detector events for /Users/swillems/Data/alphatims_testing/20210507_TIMS01_LC01_PaSk_SA_HeLa_400ng_diaPASEF_high_speed_A1_1_7546.d
2022-04-06 15:54:05> Indexing /Users/swillems/Data/alphatims_testing/20210507_TIMS01_LC01_PaSk_SA_HeLa_400ng_diaPASEF_high_speed_A1_1_7546.d...
2022-04-06 15:54:05> Bruker DLL not available, estimating mobility values
2022-04-06 15:54:05> Bruker DLL not available, estimating mz values
2022-04-06 15:54:05> Indexing quadrupole dimension
2022-04-06 15:55:09> Succesfully imported data from /Users/swillems/Data/alphatims_testing/20210507_TIMS01_LC01_PaSk_SA_HeLa_400ng_diaPASEF_high_speed_A1_1_7546.d
2022-04-06 15:55:09>