-
Notifications
You must be signed in to change notification settings - Fork 26
/
tutorial_log.txt
47 lines (47 loc) · 3.98 KB
/
tutorial_log.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
2022-04-06 15:49:34> Platform information:
2022-04-06 15:49:34> system - Darwin
2022-04-06 15:49:34> release - 20.6.0
2022-04-06 15:49:34> version - 10.16
2022-04-06 15:49:34> machine - x86_64
2022-04-06 15:49:34> processor - i386
2022-04-06 15:49:34> cpu count - 8
2022-04-06 15:49:34> cpu frequency - 2300.00 Mhz
2022-04-06 15:49:34> ram - 16.8/32.0 Gb (available/total)
2022-04-06 15:49:34>
2022-04-06 15:49:35> Python information:
2022-04-06 15:49:35> alphatims - 1.0.0
2022-04-06 15:49:35> bokeh - 2.2.3
2022-04-06 15:49:35> click - 8.0.1
2022-04-06 15:49:35> datashader - 0.12.1
2022-04-06 15:49:35> h5py - 3.2.1
2022-04-06 15:49:35> hvplot - 0.7.1
2022-04-06 15:49:35> numba - 0.53.1
2022-04-06 15:49:35> pandas - 1.2.4
2022-04-06 15:49:35> psutil - 5.8.0
2022-04-06 15:49:35> python - 3.8.10
2022-04-06 15:49:35> python-lzf - 0.2.4
2022-04-06 15:49:35> pyzstd - 0.15.0
2022-04-06 15:49:35> selenium - 3.141.0
2022-04-06 15:49:35> tqdm - 4.60.0
2022-04-06 15:49:35>
2022-04-06 15:49:35> WARNING: Temp mmap arrays are written to /var/folders/7c/8c8rlrjd311c65k2fmcnqcgm0000gn/T/temp_mmap_srk594co. Cleanup of this folder is OS dependant, and might need to be triggered manually!
2022-04-06 15:49:35> WARNING: No Bruker libraries are available for this operating system. Mobility and m/z values need to be estimated. While this estimation often returns acceptable results with errors < 0.02 Th, huge errors (e.g. offsets of 6 Th) have already been observed for some samples!
2022-04-06 15:49:35>
2022-04-06 15:49:38> Importing data from /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.d
2022-04-06 15:49:38> Reading frame metadata for /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.d
2022-04-06 15:49:40> Reading 11,886 frames with 295,251,252 detector events for /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.d
2022-04-06 15:49:44> Indexing /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.d...
2022-04-06 15:49:44> Bruker DLL not available, estimating mobility values
2022-04-06 15:49:44> Bruker DLL not available, estimating mz values
2022-04-06 15:49:44> Indexing quadrupole dimension
2022-04-06 15:49:45> Succesfully imported data from /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.d
2022-04-06 15:49:45> Writing TimsTOF data to /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.hdf.
2022-04-06 15:49:46> Succesfully wrote TimsTOF data to /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_DDA_21min_8cm_S1-C10_1_22476.hdf.
2022-04-06 15:49:52> Importing data from /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_high_speed_21min_8cm_S1-C8_1_22474.d
2022-04-06 15:49:52> Reading frame metadata for /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_high_speed_21min_8cm_S1-C8_1_22474.d
2022-04-06 15:49:52> Reading 11,868 frames with 730,564,765 detector events for /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_high_speed_21min_8cm_S1-C8_1_22474.d
2022-04-06 15:50:02> Indexing /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_high_speed_21min_8cm_S1-C8_1_22474.d...
2022-04-06 15:50:02> Bruker DLL not available, estimating mobility values
2022-04-06 15:50:02> Bruker DLL not available, estimating mz values
2022-04-06 15:50:02> Indexing quadrupole dimension
2022-04-06 15:50:03> Succesfully imported data from /Users/swillems/Data/alphatims_testing/20201207_tims03_Evo03_PS_SA_HeLa_200ng_EvoSep_prot_high_speed_21min_8cm_S1-C8_1_22474.d