DESCRIPTION

Package: scran
Version: 1.33.2
Date: 2024-09-05
Title: Methods for Single-Cell RNA-Seq Data Analysis
Description: 
    Implements miscellaneous functions for interpretation of single-cell RNA-seq data.
    Methods are provided for assignment of cell cycle phase, detection of highly
    variable and significantly correlated genes, identification of marker genes,
    and other common tasks in routine single-cell analysis workflows.
Authors@R: 
    c(person("Aaron", "Lun", role = c("aut", "cre"), email = "infinite.monkeys.with.keyboards@gmail.com"), 
    person("Karsten", "Bach", role = "aut"),
    person("Jong Kyoung", "Kim", role = "ctb"), 
    person("Antonio", "Scialdone", role="ctb"))
Depends: SingleCellExperiment, scuttle
Imports: 
    SummarizedExperiment, 
    S4Vectors,
    BiocGenerics, 
    BiocParallel,
    Rcpp, 
    stats, 
    methods, 
    utils, 
    Matrix, 
    edgeR, 
    limma, 
    igraph, 
    statmod, 
    MatrixGenerics,
    S4Arrays,
    DelayedArray, 
    BiocSingular,
    bluster,
    metapod,
    dqrng,
    beachmat
Suggests: 
    testthat, 
    BiocStyle, 
    knitr, 
    rmarkdown,
    DelayedMatrixStats,
    HDF5Array, 
    scRNAseq,
    dynamicTreeCut, 
    ResidualMatrix,
    ScaledMatrix,
    DESeq2, 
    pheatmap,
    scater
biocViews: 
    ImmunoOncology, 
    Normalization, 
    Sequencing, 
    RNASeq, 
    Software, 
    GeneExpression,
    Transcriptomics, 
    SingleCell, 
    Clustering
LinkingTo: 
    Rcpp, 
    beachmat, 
    BH, 
    dqrng,
    scuttle
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
SystemRequirements: C++11
RoxygenNote: 7.3.2
URL: https://github.com/MarioniLab/scran/
BugReports: https://github.com/MarioniLab/scran/issues