fix(ansible): use absolute path for conda executable

MedVIC-Lab · Apr 13, 2024 · db1e279 · db1e279
1 parent 29d5399
commit db1e279
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/ansible/playbook.yml b/ansible/playbook.yml
@@ -69,16 +69,17 @@
       become_user: root
     - name: Create ShapeWorks Conda Env
       ansible.builtin.shell: |
-        cd /opt/shapeworks && conda run /bin/bash -c "source install_shapeworks.sh"
-        conda clean -t -y
-        conda init
+        cd /opt/shapeworks && /opt/conda/bin/conda run /bin/bash -c "source install_shapeworks.sh"
+        /opt/conda/bin/conda clean -t -y
+        /opt/conda/bin/conda init
         echo "conda activate shapeworks" >> /home/ubuntu/.bashrc
       args:
         executable: /bin/bash
       become: true
       become_user: root
     - name: Install dependencies in ShapeWorks Conda Env
       ansible.builtin.shell: |
+        /opt/conda/bin/conda activate shapeworks
         pip install /home/ubuntu/celery_project
         pip install /home/ubuntu/celery_project/swcc
       args: