Skip to content

A Nextflow pipeline for extracting, transforming, augmenting, and loading the MetaNetX contents into a SQL database.

License

Notifications You must be signed in to change notification settings

Midnighter/metanetx-nf

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

41 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

metanetx-nf

Enrich the information coming from MetaNetX from additional sources.

Usage

  1. Set up nextflow as described here.
  2. If you didn't run this pipeline in a while, possibly update nextflow itself.
    ./nextflow self-update
    
  3. Then run the pipeline. Please specify an email parameter out of courtesy for logging into FTP servers.
    ./nextflow run https://github.com/Midnighter/metanetx-nf --email=your.name@place.earth
    

Copyright

About

A Nextflow pipeline for extracting, transforming, augmenting, and loading the MetaNetX contents into a SQL database.

Topics

Resources

License

Stars

Watchers

Forks

Packages

No packages published