.gitpod.yml

image: nfcore/gitpod:latest

tasks:
  - name: Serve mkdocs
    before: |
      python -m pip install --no-deps --require-hashes --requirement requirements.txt
    command: |
      mkdocs serve --dev-addr '0.0.0.0:8000'
  - name: Run nextflow
    command: |
      nextflow info

ports:
  - port: 8000
    onOpen: open-preview

github:
  prebuilds:
    main: true
    branches: true
    addBadge: true
    addCheck: prevent-merge-on-error

vscode:
  extensions: # based on nf-core.nf-core-extensionpack
    - codezombiech.gitignore # Language support for .gitignore files
    # - cssho.vscode-svgviewer               # SVG viewer
    - esbenp.prettier-vscode # Markdown/CommonMark linting and style checking for Visual Studio Code
    - eamodio.gitlens # Quickly glimpse into whom, why, and when a line or code block was changed
    - EditorConfig.EditorConfig # override user/workspace settings with settings found in .editorconfig files
    - Gruntfuggly.todo-tree # Display TODO and FIXME in a tree view in the activity bar
    # - mechatroner.rainbow-csv # Highlight columns in csv files in different colors
    - nextflow.nextflow # Nextflow syntax highlighting
    - oderwat.indent-rainbow # Highlight indentation level
    - streetsidesoftware.code-spell-checker # Spelling checker for source code