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ca1_7.p
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// genesis
// cell parameter file for the 1991 Traub CA1 hippocampal cell
// "phi" parameter reduced by e-3
*cartesian
*relative
*symmetric
*set_global RM 1.0 //ohm*m^2
*set_global RA 1.0 //ohm*m
*set_global CM 0.03 //F/m^2
*set_global EREST_ACT -0.06 // volts
// The format for each compartment parameter line is :
// name parent x y z d ch dens ...
// For channels, "dens" = maximum conductance per unit area of compartment
/* NOTE: The format of the cell descriptor files does not allow for
continuation to another line. The following long line lists the
soma channels with their "density" parameters.
Ca_conc -17.402e12
Not really a channel, but a "Ca_concen" object. Normally, the B
field is set to "dens"/compt_volume (m^3), but the negative sign
causes the absolute value to be used with no scaling by volume.
Na 300
Ca 40
K_DR 150
K_AHP 8
K_C 100
K_A 50
*/
basal_3 none 0 220 0 3.84 Ca_conc 8.96e-3 Ca 50 K_AHP 8 K_C 50
basal_5 . 0 220 0 3.84 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50
basal_6 . 0 220 0 3.84 Ca_conc 8.96e-3 Na 200 Ca 120 K_DR 200 K_AHP 8 K_C 100
basal_8 . 0 110 0 3.84 Ca_conc -34.53e12 Na 150 Ca 80 K_DR 100 K_AHP 8 K_C 200
soma basal_8 0 125 0 8.46 Ca_conc -17.402e12 Na 300 Ca 40 K_DR 250 K_AHP 8 K_C 100 K_A 50
apical_10 soma 0 120 0 4.0 Ca_conc -26.404e12 Na 150 Ca 80 K_DR 100 K_AHP 8 K_C 200 glu 700 NMDA 200
apical_11 apical_10 0 120 0 3 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 80 K_DR 60 K_A 100 glu 700 NMDA 200
apical_12 apical_11 0 120 0 3 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 60 K_DR 60 K_A 100 glu 700 NMDA 200
apical_13 apical_12 0 120 0 2.6 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 50 K_DR 60 K_A 100 glu 700 NMDA 200
apical_14 apical_13 0 120 0 2.6 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
apical_15 apical_14 0 120 0 2.6 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
apical_16 apical_15 0 120 0 2.6 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
apical_17 apical_16 0 120 0 2.6 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
apical_18 apical_17 0 120 0 2.6 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
apical_19 apical_18 0 120 0 2.6
lat_11_1 apical_10 -60 60 0 2 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 80 K_DR 60 K_A 100 glu 700 NMDA 200
lat_11_2 lat_11_1 -60 60 0 1.8 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
lat_11_3 lat_11_2 0 80 0 1.5 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
lat_11_4 lat_11_3 0 80 0 1.5 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
lat_13_1 apical_12 40 40 0 1.0 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
lat_13_2 lat_13_1 40 40 0 1.0 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
lat_14_1 lat_13_2 0 10 0 1.0 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
lat_14_2 . 0 10 0 1.0 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
lat_14_3 . 0 70 0 1.0 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
lat_14_10 . 0 30 0 1.0 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
lat_15_1 . 0 60 0 1.0 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
lat_15_2 . 0 60 0 1.0 Ca_conc 8.96e-3 Ca 70 K_AHP 8 K_C 50 Na 40 K_DR 60 K_A 100 glu 700 NMDA 200
spine_neck_14_1 lat_14_1 0.5 0 0 0.1
spine_head_14_1 . 0.5 0 0 0.5 NMDA_Ca_conc 8.96e-3 glu 700 Ca_NMDA 20 NMDA 200 Ca 60
spine_neck_14_2 lat_14_2 0.5 0 0 0.1
spine_head_14_2 . 0.5 0 0 0.5 NMDA_Ca_conc 8.96e-3 glu 700 Ca_NMDA 20 NMDA 200 Ca 60
spine_neck_14_10 lat_14_10 0.5 0 0 0.1
spine_head_14_10 . 0.5 0 0 0.5 NMDA_Ca_conc 8.96e-3 glu 700 Ca_NMDA 20 NMDA 200 Ca 60