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ModFossa: a library for modeling ion channels using Python (Ferneyhough et al 2016)

modeldb.science/195626

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The modFoss package for ion channel analysis as described in the paper

Ferneyhough GB, Thibealut CM, Dascalu SM, Harris FC (2016)
ModFossa: A library for modeling ion channels using Python.
J Bioinform Comput Biol 14:1642003

is available in github:

<a href="https://github.com/gareth-ferneyhough/modfossa">https://github.com/gareth-ferneyhough/modfossa</a>

After building the python package you can run the examples provided in
the samples folder.  For example running

python Angerman2006.py

and will produce graphs like:
<img src="./figure_1.png" alt="figure 1" width="550">
<img src="./figure_1-1.png" alt="figure 1-1" width="550">
<img src="./figure_1-2.png" alt="figure 1-2" width="550">
<img src="./figure_1-3.png" alt="figure 1-3" width="550">
<img src="./figure_1-4.png" alt="figure 1-4" width="550">

Note from the ModelDB administrator:

When I was following the install instructions for modFoss on an ubuntu
16.04.01 in my home bin folder (/home/morse/bin) I found it helpful to
export these

export CPATH=/home/morse/bin/sundials-2.6.2/instdir/include/
export LIBRARY_PATH=/home/morse/bin/sundials-2.6.2/instdir/lib
in addition to their suggested
export LD_LIBRARY_PATH=/home/morse/bin/sundials-2.6.2/instdir/lib