OBNet.hoc

// ****************************************************************************************************
// 2D OB network model to study the mechanisms of gamma oscillations in the olfacotry bulb
// Developed by Guoshi Li, University of North Carolina at Chapel Hill (guoshi_li@med.unc.edu) 

// Simulation results are presented in the associated paper:
// Li and Cleland (2017) A coupled-oscilaltor model of olfacotry bulb gamma oscillations.  
// PLOS Computational Biology (In Press).
// ****************************************************************************************************


xopen("$(NEURONHOME)/lib/hoc/noload.hoc") // standard run tools
xopen("tabchannels.hoc")
nrncontrolmenu()

v_init  = -70    // to match pas 
tstop   = 3000   // simulation time
celsius = 35

dt = 0.002       // simulation step

steps_per_ms = 5  // For graphic display: 5 data points per ms
secondorder  = 2  // Crank-Nicholson integration method


xpanel("Auto launch menu")
  xbutton("Default run 3000ms ", "default_run()")
  xbutton("Short demo 30 ms","demo_run()")
xpanel()



load_file("Parameter.hoc")
load_file("mathslib.hoc")
load_file("MC_def.hoc") 
load_file("PG_def.hoc")
load_file("GC_def.hoc")             
load_file("Connect.hoc")
load_file("Background.hoc")
load_file("Input.hoc")
load_file("Figure.hoc")
load_file("SaveData.hoc")




proc advance() {
fadvance()
}

proc run() {
  running_ = 1
  stdinit()
  continuerun(tstop)
}






proc default_run() {
  
  tstop   = 3000    // Total simulation time: 3 sec
  Fig_MC() 
  NetStim[0].seed(NSSEED)
  run()
  save_data(0)
}


proc demo_run() {
  tstop   = 30    // Total simulation time: 0.03 sec
  Fig_MC()  
  NetStim[0].seed(NSSEED)
  run()
  save_data(0)
}