script_in2bc.m

# THIS SOFTWARE COMES WITH NO WARRANTY WHATSOEVER, EXPRESSED OR IMPLIED. 
# USE IT AT YOUR OWN RISK!
#
#	By T.I. Toth, Cardiff University, U.K.; 1996-2002
#
#
#	This is a driver script file in Octave for the function in_estim2bc
#	and its outputs;
# N.B. The input data should be loaded or defined before using this programme.
#
#

1;		# This is to indicate that this is NOT a function

# Signal ready:
	printf("\a\n");

# Edit the particulars (filename, k_range, name of the data matrix) below
# (file.name: name of the output file where the estimation results are saved;
#  k_range=[k1:k2], or k_range=[k1,k2,k3:k4,k5] etc.; actual name for the
#  data matrix burst should be used):

	fnam1="file.name"

	[fnum1,errmsg]=fopen(fnam1,"a");

# Print file header:
	fprintf(fnum1,"\n\n\n\n\n\n");
fprintf(fnum1,"\t\t\t File: %s with parmT, parhT, parmH\n\n",fnam1);
	fprintf(fnum1,"    Estimtion interval (ms): [%4.1f,%5.1f]",tb,te);
	fprintf(fnum1,"    Stimulus start at %5.1f ms.\n\n\n",tsb);
	fprintf(fnum1," k0  Iin(pA)   Cm(pF)   gCa(nS)  gH(nS)    gL(nS)  EL(mV)  Er(mV)    Eh(mV)   Ih(pA)\n");

# Compute estimates using in_estim2bc for every trace:
	for k0=k_range
	   [Cm,gH,gCa,gL,cih,Eh,EL,Er,ci2,t,v,vch,dv,IL,IH,IT]=\
		in_estim2bc(burst,tsb,tse,tb,te,k0,mch,dc_shift,cifc,\
		parmH,EH,parmT,parhT,ECa);
	   fprintf(fnum1,"%2d   %7.2f  %7.2f  %7.2f  %7.2f %7.2f  %7.2f %7.2f  %7.2f   %7.2f\n",k0,ci2,Cm,gCa,gH,gL,EL,Er,Eh,cih);
	   printf("rel_sq_err=%13.6e\n",norm(ci2-Cm*dv-IH-IL-IT)/abs(ci2));
	endfor

fprintf(fnum1,"\n parmT: %12.5g %12.5g %12.5g %12.5g %12.5g\n",parmT);
fprintf(fnum1," parhT: %12.5g %12.5g %12.5g %12.5g %12.5g\n",parhT);
fprintf(fnum1," parmH: %12.5g %12.5g %12.5g %12.5g %12.5g %12.5g %12.5g\n",parmH);

	fclose(fnum1);
	clear fnum1 fnam1