Feature/beartype exceptions

[97gamjak]

RDF analysis module fully type checked for all user relevant functions

Now also logger is implemented in the whole module - no more exceptions or warns.warnings

[codecov]

Codecov Report

Attention: Patch coverage is 84.84848% with 15 lines in your changes are missing coverage. Please review.

Project coverage is 77.52%. Comparing base (3585a95) to head (199734c).
Report is 2 commits behind head on dev.

Additional details and impacted files

@@            Coverage Diff             @@
##              dev      #41      +/-   ##
==========================================
+ Coverage   75.73%   77.52%   +1.79%     
==========================================
  Files         119      119              
  Lines        4237     4272      +35     
==========================================
+ Hits         3209     3312     +103     
+ Misses       1028      960      -68     

Flag	Coverage Δ
unittests	77.52% <84.84%> (+1.79%)	⬆️

Files	Coverage Δ
PQAnalysis/analysis/rdf/rdf_input_file_reader.py	80.00% <100.00%> (+0.83%)	⬆️
PQAnalysis/analysis/rdf/rdf_output_file_writer.py	35.71% <100.00%> (+11.71%)	⬆️
PQAnalysis/topology/selection.py	98.58% <100.00%> (ø)
PQAnalysis/traj/trajectory.py	100.00% <100.00%> (ø)
PQAnalysis/type_checking.py	75.00% <100.00%> (+7.43%)	⬆️
PQAnalysis/utils/units.py	100.00% <100.00%> (ø)
PQAnalysis/utils/custom_logging.py	75.49% <75.00%> (-1.05%)	⬇️
PQAnalysis/analysis/rdf/rdf.py	77.24% <80.88%> (+46.57%)	⬆️

[github-actions]

PYLINT REPORT

Your code has been rated at 9.89/10 (previous run: 9.87/10, +0.02)

Full report

Raw metrics

type	number	%	previous	difference
code	6527	38.84	6473	+54.00
docstring	7783	46.32	7755	+28.00
comment	221	1.32	226	-5.00
empty	2273	13.53	2253	+20.00

Duplication

	now	previous	difference
nb duplicated lines	0	0	0
percent duplicated lines	0.000	0.000	=

Messages by category

type	number	previous	difference
convention	0	10	10
refactor	37	36	36
warning	7	8	8
error	0	0	0

Messages

message id	occurrences
too-many-arguments	18
too-many-instance-attributes	10
fixme	7
too-many-locals	3
duplicate-code	2
too-many-statements	1
too-many-return-statements	1
too-many-branches	1
too-complex	1