Feature/combine cli

[97gamjak]

Added a combined cli interface

closes #40

[codecov]

Codecov Report

Attention: Patch coverage is 68.69159% with 67 lines in your changes are missing coverage. Please review.

Project coverage is 80.33%. Comparing base (4913831) to head (d041b18).
Report is 1 commits behind head on dev.

Additional details and impacted files

@@            Coverage Diff             @@
##              dev      #49      +/-   ##
==========================================
+ Coverage   80.23%   80.33%   +0.10%     
==========================================
  Files         119      121       +2     
  Lines        4411     4562     +151     
==========================================
+ Hits         3539     3665     +126     
- Misses        872      897      +25     

Flag	Coverage Δ
unittests	80.33% <68.69%> (+0.10%)	⬆️

Files	Coverage Δ
PQAnalysis/cli/_argument_parser.py	91.83% <100.00%> (-1.79%)	⬇️
PQAnalysis/cli/_cli_base.py	100.00% <100.00%> (ø)
PQAnalysis/cli/continue_input.py	96.55% <94.44%> (-3.45%)	⬇️
PQAnalysis/cli/rst2xyz.py	96.66% <94.44%> (-3.34%)	⬇️
PQAnalysis/cli/traj2box.py	96.55% <94.11%> (-3.45%)	⬇️
PQAnalysis/cli/traj2qmcfc.py	96.42% <93.75%> (-3.58%)	⬇️
PQAnalysis/cli/rdf.py	79.41% <66.66%> (+2.13%)	⬆️
PQAnalysis/cli/gen2xyz.py	66.66% <55.55%> (+11.11%)	⬆️
PQAnalysis/cli/xyz2gen.py	66.66% <55.55%> (+11.11%)	⬆️
PQAnalysis/cli/main.py	64.28% <64.28%> (ø)
... and 2 more

[github-actions]

PYLINT REPORT

Your code has been rated at 9.86/10 (previous run: 9.86/10, +0.00)

Full report

Raw metrics

type	number	%	previous	difference
code	6971	39.06	6789	+182.00
docstring	8198	45.93	7921	+277.00
comment	269	1.51	269	=
empty	2411	13.51	2349	+62.00

Duplication

	now	previous	difference
nb duplicated lines	0	0	0
percent duplicated lines	0.000	0.000	=

Messages by category

type	number	previous	difference
convention	0	0	0
refactor	43	43	43
warning	16	16	16
error	0	0	0

Messages

message id	occurrences
too-many-arguments	18
too-many-instance-attributes	10
fixme	10
duplicate-code	4
too-many-locals	3
too-complex	3
unused-argument	2
too-many-branches	2
protected-access	2
unused-import	1
too-many-statements	1
too-many-return-statements	1
too-many-public-methods	1
broad-exception-raised	1