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Convert dicom directories to BIDS

Small wrapper for dcm2bids by @cbedetti for converting dicoms acquired by the POND and KIND studies to BIDS. Based on work by Michael Joseph (@josephmje). To use, clone this repository and create a python virtual environment in the repository top level directory and install the requirements listed in requirements.txt, then put the <repo>/bin directory on your path to use dcm2bids_conversion. Example usage:

dcm2bids_conversion \
    -d SPReD \
    -b Queens_BIDS/ \
    -c POND-config.json \
    -g "PND03*MR" \
    -sr 'QNS_[0-9][0-9][0-9][0-9]' \
    -vr "_([0-9][0-9])_" \
    -ps "QNS" "394" \
    -psg "_" ""