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checking h5py key to open binaries before data_path #1042

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merged 3 commits into from
Nov 30, 2023
Merged

checking h5py key to open binaries before data_path #1042

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2c10f89
checking h5py key to open binaries before data_path
arielleleon Oct 12, 2023
f3e0683
fixing bug in code
arielleleon Oct 12, 2023
afc9bff
Update utils.py
arielleleon Nov 10, 2023
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17 changes: 8 additions & 9 deletions suite2p/io/utils.py
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
"""
Copyright © 2023 Howard Hughes Medical Institute, Authored by Carsen Stringer and Marius Pachitariu.
Copright © 2023 Howard Hughes Medical Institute, Authored by Carsen Stringer and Marius Pachitariu.
"""
import glob
import os
Expand Down Expand Up @@ -227,18 +227,17 @@ def find_files_open_binaries(ops1, ish5=False):
input_format = "h5"
print(input_format)
if input_format == "h5":
if len(ops1[0]["data_path"]) > 0:
fs, ops2 = get_h5_list(ops1[0])
print("NOTE: using a list of h5 files:")
print(fs)
# find h5"s
print(f"OPS1 h5py: {ops1[0]['h5py']}")
if ops1[0]["h5py"]:
fs = ops1[0]["h5py"]
else:
if ops1[0]["look_one_level_down"]:
fs = list_h5(ops1[0])
if len(ops1[0]["data_path"]) > 0:
fs, ops2 = get_h5_list(ops1[0])
print("NOTE: using a list of h5 files:")
print(fs)
# find h5"s
else:
fs = [ops1[0]["h5py"]]
raise Exception("No h5 files found")
elif input_format == "sbx":
# find sbx
fs, ops2 = get_sbx_list(ops1[0])
Expand Down
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