Here I will host some notebooks for illustrating some useful tools for fmri data processing in python.
Additionally, this repo will also be be used to host some useful functions.
I have also provided some general readmes on why I like to use python and nipype and nilearn/nibabel.
| Chapter | Notebook | Description | Link to slides |
|---|---|---|---|
| 1 | Nipype_1 | An introduction to nipype with a minimal example. | Placeholder |
| 2 | Data_handling | An introduction to manipulating image volumes using nibabel and nilearn. | Placeholder |
| 3 | Using fmriprep & SLURM | A brief guide to using fmriprep on the computing cluster | Placeholder |
| 4 | Pycortex | A brief notebook that showcases the wonderful plotting functions of pycortex | Placeholder |