diff --git a/ci/conda-linux-64.lock b/ci/conda-linux-64.lock index cea133f..59cab76 100644 --- a/ci/conda-linux-64.lock +++ b/ci/conda-linux-64.lock @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: fae7a55d555a8fe2d8241c127dbaef846f1585f60f34743c36ad79d98e82601a +# input_hash: 10e144def2aa8b073af39d687739f9cb9614ba9f013d7878d9b10ed70edeb29f @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.11.17-hbcca054_0.conda#01ffc8d36f9eba0ce0b3c1955fa780ee @@ -9,11 +9,11 @@ https://conda.anaconda.org/conda-forge/noarch/font-ttf-inconsolata-3.000-h77eed3 https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77eed37_0.tar.bz2#4d59c254e01d9cde7957100457e2d5fb https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-h77eed37_1.conda#6185f640c43843e5ad6fd1c5372c3f80 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https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2#f766549260d6815b0c52253f1fb1bb29 https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_3.conda#7124cbb46b13d395bdde68f2d215c989 https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d @@ -22,14 +22,14 @@ https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_3.cond https://conda.anaconda.org/conda-forge/linux-64/alsa-lib-1.2.10-hd590300_0.conda#75dae9a4201732aa78a530b826ee5fe0 https://conda.anaconda.org/conda-forge/linux-64/aom-3.7.1-h59595ed_0.conda#504e70332b8322cda93b7bceb5925fca https://conda.anaconda.org/conda-forge/linux-64/attr-2.5.1-h166bdaf_1.tar.bz2#d9c69a24ad678ffce24c6543a0176b00 -https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.9.8-hd590300_0.conda#1fd5f2ae093f2dbf28dc4f18fca57309 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-https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-serializinghtml-1.1.9-pyhd8ed1ab_0.conda#0612e497d7860728f2cda421ea2aec09 +https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-serializinghtml-1.1.10-pyhd8ed1ab_0.conda#e507335cb4ca9cff4c3d0fa9cdab255e diff --git a/ci/environment.yml b/ci/environment.yml index 0aaef1d..0af6ebe 100644 --- a/ci/environment.yml +++ b/ci/environment.yml @@ -11,8 +11,7 @@ dependencies: - h5netcdf - netcdf4>=1.6.4 - h5py - - gdal~=3.6 - - libgdal + - gdal~=3.8 - geoviews - holoviews=1.16.2 - matplotlib-base @@ -37,26 +36,33 @@ dependencies: - ipyleaflet # when jlab 4 gets released we can upgrade dask-labextension # - dask-labextension - - dask-labextension==6.2.0 + # - dask-labextension==6.2.0 + - dask-labextension - jupyter-server-proxy - ipywidgets - jupyter-book - - jupyterlab<4 + - jupyterlab>4 - jupyterlab-myst - jupyterhub-singleuser - jupyterlab-geojson - jupyterlab-favorites - jupyterlab-git - - jupyter-resource-usage<1.0.0a - - jupyterlab-h5web<8.0 - # - hdf5plugin + - jupyter-resource-usage + - jupyterlab-h5web + - hdf5plugin - ipympl - conda-lock - pooch - earthaccess>=0.8.2 - sliderule>=3.6.0 - - qgis + # QGIS + - qgis~=3.28 + - pyopencl + - ocl-icd-system + - websockify>=0.10 + # /QGIS - h5coro + - git >=2.39 - itslive - rasterstats - kerchunk @@ -71,9 +77,6 @@ dependencies: - jupyter-server-proxy - jupyter-vscode-proxy - code-server >=3.2 - - websockify - - pyopencl - - ocl-icd-system - pip platforms: - linux-64 diff --git a/ci/start b/ci/start index eee5e3f..1a1fdd0 100644 --- a/ci/start +++ b/ci/start @@ -3,8 +3,34 @@ set -euo pipefail # ==== ONLY EDIT WITHIN THIS BLOCK ===== +# Taken from https://github.com/CryoInTheCloud/hub-image/blob/main/start export DISPLAY=":1.0" +# Add any .desktop files to the application database and desktop. This is done +# at startup-time because it's expected that a remote filesystem will be +# mounted at $HOME, which would overwrite the data if it was created at +# build-time. +APPLICATIONS_DIR="${HOME}/.local/share/applications" +DESKTOP_DIR="${HOME}/Desktop" +mkdir -p "${APPLICATIONS_DIR}" +mkdir -p "${DESKTOP_DIR}" +for desktop_file_path in ${REPO_DIR}/*.desktop; do + cp "${desktop_file_path}" "${APPLICATIONS_DIR}/." + + # Symlink application to desktop + desktop_file_name="$(basename ${desktop_file_path})" + ln -sf "${APPLICATIONS_DIR}/${desktop_file_name}" "${DESKTOP_DIR}/${desktop_file_name}" +done +update-desktop-database "${APPLICATIONS_DIR}" + +# Add MIME Type data from XML files in `mime/` dir to the MIME database. +MIME_DIR="${HOME}/.local/share/mime" +MIME_PACKAGES_DIR="${MIME_DIR}/packages" +mkdir -p "${MIME_PACKAGES_DIR}" +for mime_file_path in ${REPO_DIR}/mime/*.xml; do + cp "${mime_file_path}" "${MIME_PACKAGES_DIR}/." +done +update-mime-database "${MIME_DIR}" # ==== ONLY EDIT WITHIN THIS BLOCK =====