Merge pull request #28 from NCAR/devel

Merging Version 0.1 into master

.gitignore

@@ -0,0 +1,3 @@
+*.spec
+*.pyc
+*.nc

.project

@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>PyConform</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.python.pydev.PyDevBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.python.pydev.pythonNature</nature>
+	</natures>
+</projectDescription>

.pydevproject

@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<?eclipse-pydev version="1.0"?><pydev_project>
+
+<pydev_property name="org.python.pydev.PYTHON_PROJECT_VERSION">python 2.7</pydev_property>
+<pydev_property name="org.python.pydev.PYTHON_PROJECT_INTERPRETER">Homebrew Python 2.7</pydev_property>
+<pydev_pathproperty name="org.python.pydev.PROJECT_SOURCE_PATH">
+<path>/${PROJECT_DIR_NAME}/source</path>
+</pydev_pathproperty>
+</pydev_project>

CHANGES.rst

@@ -6,6 +6,18 @@ See the LICENSE.rst file for details
 
 VERSION 0.0.1
 -------------
+06 Jan 2016:
+ - Add date check/mapping ability.
+
+19 Nov 2015:
+ - Added initial CESM to CMIP6 JSON tables to the examples directory.
+ - Added the code within examples/CESM/CMIP6/src used to generate these tables.
+
+18 Nov 2015:
+ - Added initial CESM to CMIP5 JSON tables to examples directory
+
+17 Nov 2015:
+ - Add initial version of mip_table_parser.py.
 
 03 Nov 2015:
  - Add initial versions of climIO.py and its unit test.

README.rst

@@ -5,7 +5,7 @@ A package for transforming a NetCDF dataset into a defined format
 suitable for publication according to a defined publication standard.
 
 :AUTHORS: Sheri Mickelson, Kevin Paul
-:COPYRIGHT: 2015, University Corporation for Atmospheric Research
+:COPYRIGHT: 2016, University Corporation for Atmospheric Research
 :LICENSE: See the LICENSE.rst file for details
 
 Send questions and comments to Kevin Paul (kpaul@ucar.edu) or

examples/CESM/CMIP5/CMIP5_3hr.json

@@ -0,0 +1,23 @@
+"clt=CLDTOT unit conversion"
+"hfls=LHFLX no change"
+"hfss=SHFLX no change"
+"huss=QREFHT no change"
+"mrro=UNAVAILABLE"
+"mrsos=UNAVAILABLE"
+"pr=PRECC + PRECL and unit conversion"
+"prc=PRECC unit conversion"
+"prsn=PRECSC + PRECSL and unit conversion"
+"ps=PS no change"
+"rlds=FLDS no change"
+"rldscs=FLDSC no change"
+"rlus=FLDS + FLNS"
+"rsds=FSDS no change"
+"rsdsdiff=UNAVAILABLE"
+"rsdscs=FSDSC no change"
+"rsus=FSDS - FSNS"
+"rsuscs=Would be FSDSC - FSNSC"
+"tslsi=UNAVAILABLE"
+"tso=UNAVAILABLE"
+"tas=TREFHT no change"
+"uas=UNAVAILABLE"
+"vas=UNAVAILABLE"

examples/CESM/CMIP5/CMIP5_6hrLev.json

@@ -0,0 +1,5 @@
+"hus=Q no change"
+"ps=PS no change"
+"ta=T no change"
+"ua=U no change"
+"va=V no change"

examples/CESM/CMIP5/CMIP5_6hrPlev.json

@@ -0,0 +1,4 @@
+"psl=PSL no change"
+"ta=T interpolated to standard plev3"
+"ua=U interpolated to standard plev3"
+"va=V interpolated to standard plev3"

examples/CESM/CMIP5/CMIP5_Amon.json

@@ -0,0 +1,77 @@
+"ccb=UNAVAILABLE"
+"cct=UNAVAILABLE"
+"cfc113global=UNKNOWN"
+"cfc11global=f11vmr convert to mass"
+"cfc12global=f12vmr convert to mass"
+"ch4=CH4 interpolated to standard plevs"
+"ch4Clim=UNKNOWN"
+"ch4global=ch4vmr convert to mass"
+"ch4globalClim=UNKNOWN"
+"ci=FREQZM unit conversion" (*** cannot find the conversion in code)
+"cl=CLOUD on model levels, no change"
+"cli=CLDICE on model levels, no change"
+"clivi=TGCLDIWP no change"
+"clt=CLDTOT unit conversion" (*** cannot find the conversion in code)
+"clw=CLDLIQ on model levels, no change"
+"clwvi=TGCLDLWP no change"
+"co2=CO2 interpolated to standard plevs, scaled by 28.966/44"
+"co2Clim=UNKNOWN"
+"co2mass=co2vmr convert to mass"
+"co2massClim=UNKNOWN"
+"evspsbl=QFLX no change"
+"fco2antt=UNKNOWN"
+"fco2fos=UNKNOWN"
+"fco2nat=UNKNOWN"
+"hcfc22global=UNKNOWN"
+"hfls=LHFLX no change"
+"hfss=SHFLX no change"
+"hur=RELHUM interpolated to standard plevs"
+"hurs=RHREFHT no change"
+"hus=Q interpolated to standard plevs"
+"huss=QREFHT no change"
+"mc=CMFMC + CMFMCDZM on model levels, no change"
+"n2o=N2O interpolated to standard plevs"
+"n2oClim=UNKNOWN"
+"n2oglobal=n2ovmr convert to mass"
+"n2oglobalClim=UNKNOWN"
+"prAdjust=UNKNOWN"
+"pr=PRECC + PRECL and unit conversion from m s-1 to kg m-2 s-1"
+"prc=PRECC unit conversion from m s-1 to kg m-2 s-1"
+"prsn=PRECSC + PRECSL and unit conversion from m s-1 to kg m-2 s-1"
+"prw=TMQ no change"
+"ps=PS no change"
+"pslAdjust=UNKNOWN"
+"psl=PSL no change"
+"rlds=FLDS no change"
+"rldscs=FLDSC no change"
+"rlus=FLDS + FLNS"
+"rlut=FSNTOA-FSNT+FLNT"
+"rlutcs=FLUTC no change"
+"rsds=FSDS no change"
+"rsdscs=FSDSC no change"
+"rsdt=SOLIN no change"
+"rsus=FSDS - FSNS"
+"rsuscs=FSDSC - FSNSC"
+"rsut=SOLIN - FSNTOA"
+"rsutcs=SOLIN - FSNTOAC"
+"rtmt=FSNT - FLNT"
+"sbl=UNAVAILABLE"
+"sci=FREQSH no change"
+"sfcWind=U10 no change"
+"ta=T interpolated to standard plevs"
+"tasAdjust=UNKNOWN"
+"tas=TREFHT no change"
+"tasmax=TREFMXAV no change"
+"tasmin=TREFMNAV no change"
+"tauu=TAUX no change"
+"tauv=TAUY no change"
+"tro3=O3 interpolated to standard plevs"
+"tro3Clim=UNKNOWN"
+"tsAdjust=UNKNOWN"
+"ts=TS no change"
+"ua=U interpolated to standard plevs"
+"uas=UNAVAILABLE"
+"va=V interpolated to standard plevs"
+"vas=UNAVAILABLE"
+"wap=OMEGA interpolated to standard plevs"
+"zg=Z3 interpolated to standard plevs"

examples/CESM/CMIP5/CMIP5_LImon.json

@@ -0,0 +1,12 @@
+"agesno=UNAVAILABLE"
+"hfdsn=FGR"
+"lwsnl=SNOWLIQ no change"
+"pflw=UNAVAILABLE"
+"sbl=would be QFLX_SUB_SNOW"
+"snc=FSNO, mulitply by 100 to get percentage"
+"snd=SNOWDP unchanged"
+"snm=QMELT, unit change from mm s-1 to kg m-2 s-1, same numerical value"(where (indat2a /= var_info(var_found(1,1))%missing_value), else 0)
+"snw=H2OSNO, unit change from mm to kg m-2, same numerical value"
+"sootsn=SNOBCMSL + SNODSTMSL + SNOOCMSL"
+"tpf=UNAVAILABLE"
+"tsn=would be SNOTTOPL"

examples/CESM/CMIP5/CMIP5_Lmon.json

@@ -0,0 +1,59 @@
+"baresoilFrac=UNAVAILABLE"
+"burntArea=ANN_FAREA_BURNED, unit change 'proportion' to percentage *100."
+"c3PftFrac=UNAVAILABLE"
+"c4PftFrac=UNAVAILABLE"
+"cCwd=CWDC, Unit change - grams to kg"
+"cLeaf=LEAFC, Unit change - grams to kg"
+"cLitterAbove=UNAVAILABLE"
+"cLitterBelow=UNAVAILABLE"
+"cLitter=TOTLITC, Unit change - grams to kg"
+"cMisc=STORVEGC, Unit change - grams to kg"
+"cProduct=TOTPRODC, Unit change - grams to kg"
+"cRoot=FROOTC+LIVE_ROOTC+DEAD_ROOTC, Unit change - grams to kg"
+"cropFrac=UNAVAILABLE"
+"cSoilFast=SOIL1C+SOIL2C, Unit change - grams to kg"
+"cSoil=TOTSOMC, Unit change - grams to kg"
+"cSoilMedium=SOIL3C, Unit change - grams to kg"
+"cSoilSlow=SOIL4C, Unit change - grams to kg"
+"cVeg=TOTVEGC, Unit change - grams to kg"
+"cWood=WOODC, Unit change - grams to kg"
+"evspsblsoi=QSOIL"
+"evspsblveg=QVEGE"
+"fFire=COL_FIRE_CLOSS, Unit change - grams to kg"
+"fGrazing=UNAVAILABLE"
+"fHarvest=UNAVAILABLE"
+"fLitterSoil=LITR1C_TO_SOIL1C+LITR2C_TO_SOIL2C+LITR3C_TO_SOIL3C, Unit change - grams to kg"
+"fLuc=DWT_CLOSS+PRODUCT_CLOSS, Unit change - grams to kg"
+"fVegLitter=LITFALL, Unit change - grams to kg"
+"fVegSoil=UNAVAILABLE"
+"gpp=GPP, Unit change - grams to kg"
+"grassFrac=UNAVAILABLE"
+"lai=TLAI"
+"landCoverFrac=UNAVAILABLE"
+"mrfso=SOILICE integrated over all layers"
+"mrlsl=SOILLIQ + SOILICE at each soil depth"
+"mrro=QRUNOFF"
+"mrros=QOVER"
+"mrso=SOILICE+SOILLIQ, mask over ice-covered regions at 5000 kg m-2"
+"mrsos=SOILWATER_10CM"
+"nbp=NBP, Unit change - grams to kg"
+"nep=UNKNOWN"
+"npp=NPP, Unit change - grams to kg"
+"nppLeaf=LEAFC_ALLOC, Unit change - grams to kg"
+"nppRoot=FROOTC_ALLOC, Unit change - grams to kg"
+"nppWood=WOODC_ALLOC, Unit change - grams to kg"
+"pastureFrac=UNAVAILABLE"
+"prveg=QINTR"
+"ra=AR, Unit change - grams to kg"
+"residualFrac=UNAVAILABLE"
+"rGrowth=GR, Unit change - grams to kg"
+"rh=HR, Unit change - grams to kg"
+"rMaint=MR, Unit change - grams to kg"
+"shrubFrac=UNAVAILABLE"
+"tran=QSOIL + QVEGT"
+"treeFrac=UNAVAILABLE"
+"treeFracPrimDec=UNAVAILABLE"
+"treeFracPrimEver=UNAVAILABLE"
+"treeFracSecDec=UNAVAILABLE"
+"treeFracSecEver=UNAVAILABLE"
+"tsl=TSOI"

examples/CESM/CMIP5/CMIP5_OImon.json

@@ -0,0 +1,40 @@
+"ageice=UNAVAILABLE"
+"bmelt=meltb, (divide by 86400 s day-1, divide by 100 cm m-1, times 1000 kg m-3)/8640"
+"divice=divu" ?????
+"eshrice=UNAVAILABLE"
+"evap=evap_ai, (divide by 86400 s day-1, divide by 100 cm m-1, times 1000 kg m-3)/8640"
+"grCongel=congel, (divide by 86400 s day-1, divide by 100 cm m-1, times 1000 kg m-3)/8640"
+"grFrazil=frazil, (divide by 86400 s day-1, divide by 100 cm m-1, times 1000 kg m-3)/8640"
+"grLateral=UNAVAILABLE"
+"hcice=UNAVAILABLE"
+"hflssi=flat_ai"
+"hfssi=fsens_ai"
+"ialb=UNAVAILABLE"
+"nshrice=UNAVAILABLE"
+"pr=rain_ai, (divide by 86400 s day-1, divide by 100 cm m-1, times 1000 kg m-3)/8640"
+"prsn=snow_ai, (divide by 86400 s day-1, divide by 100 cm m-1, times 1000 kg m-3)/8640"
+"ridgice=UNAVAILABLE"
+"rldssi=flwdn"
+"rlussi=flwup"
+"rsdssi=fswdn"
+"rsussi=UNAVAILABLE"
+"sblsi=UNAVAILABLE"
+"sic=aice" ?????
+"sim=UNAVAILABLE"
+"sit=hi unchanged" ?????
+"snc=UNAVAILABLE"
+"snd=hs" ?????
+"snomelt=melts, (divide by 86400 s day-1, divide by 100 cm m-1, times 1000 kg m-3)/8640"
+"snoToIce=snoice, (divide by 86400 s day-1, divide by 100 cm m-1, times 1000 kg m-3)/8640"
+"ssi=UNAVAILABLE"
+"strairx=strairx"
+"strairy=strairy"
+"streng=strength" ?????
+"strocnx=strocnx" ?????
+"strocny=strocny" ?????
+"tmelt=meltt, (divide by 86400 s day-1, divide by 100 cm m-1, times 1000 kg m-3)/8640"
+"transifs=UNAVAILABLE"
+"transix=UNAVAILABLE"
+"transiy=UNAVAILABLE"
+"tsice=Tsfc" ?????
+"tsnint=UNAVAILABLE"

examples/CESM/CMIP5/CMIP5_Oclim.json

@@ -0,0 +1,32 @@
+"difmxybo2d=UNKNOWN"
+"difmxybo=UNKNOWN"
+"difmxylo2d=UNKNOWN"
+"difmxylo=UNKNOWN"
+"diftrbbo2d=UNKNOWN"
+"diftrbbo=UNKNOWN"
+"diftrblo2d=UNKNOWN"
+"diftrblo=UNKNOWN"
+"diftrebo2d=UNKNOWN"
+"diftrebo=UNKNOWN"
+"diftrelo2d=UNKNOWN"
+"diftrelo=UNKNOWN"
+"diftrxybo2d=UNKNOWN"
+"diftrxybo=UNKNOWN"
+"diftrxylo2d=UNKNOWN"
+"diftrxylo=UNKNOWN"
+"difvho=UNKNOWN"
+"difvmbo=UNKNOWN"
+"difvmfdo=UNKNOWN"
+"difvmo=UNKNOWN"
+"difvmto=UNKNOWN"
+"difvso=UNKNOWN"
+"difvtrbo=UNKNOWN"
+"difvtrto=UNKNOWN"
+"dispkevfo=UNKNOWN"
+"dispkexyfo2d=UNKNOWN"
+"dispkexyfo=UNKNOWN"
+"tnkebto2d=UNKNOWN"
+"tnkebto=UNKNOWN"
+"tnpeo=UNKNOWN"
+"tnpeotb=UNKNOWN"
+"tnpeot=UNKNOWN"