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deploy: 0df8110
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jaamarks committed Oct 3, 2024
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24 changes: 18 additions & 6 deletions getting_started/configuration.html
Original file line number Diff line number Diff line change
Expand Up @@ -1079,6 +1079,7 @@ <h3>Workflow Parameters<a class="headerlink" href="#workflow-parameters" title="
<span class="w"> </span><span class="nt">lims_output_dir</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">/DCEG/CGF/Laboratory/LIMS/drop-box-prod/gwas_primaryqc/</span>
<span class="w"> </span><span class="nt">case_control_gwas</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">false</span>
<span class="w"> </span><span class="nt">max_time_hr</span><span class="p">:</span>
<span class="w"> </span><span class="nt">max_mem_mb</span><span class="p">:</span>
<span class="w"> </span><span class="nt">time_start</span><span class="p">:</span>
</pre></div>
</div>
Expand Down Expand Up @@ -1253,24 +1254,35 @@ <h3>Workflow Parameters<a class="headerlink" href="#workflow-parameters" title="
</td>
<td colspan="2"><p><em>Max Time Hr</em></p></td>
</tr>
<tr class="row-even"><td colspan="2"><p>Allocates the specified number of hours to the following rules: <code class="docutils literal notranslate"><span class="pre">sample_concordance_plink</span></code>, <code class="docutils literal notranslate"><span class="pre">sample_concordance_king</span></code>, <code class="docutils literal notranslate"><span class="pre">sample_concordance_summary</span></code>, <code class="docutils literal notranslate"><span class="pre">sample_level_ibd</span></code>, and <code class="docutils literal notranslate"><span class="pre">population_level_ibd</span></code>.</p></td>
<tr class="row-even"><td colspan="2"><p>The maximum amount of time that can be requested, in hours.</p></td>
</tr>
<tr class="row-odd"><td><p>type</p></td>
<td><p><em>integer</em></p></td>
</tr>
<tr class="row-even"><td rowspan="4"><ul class="simple">
<tr class="row-even"><td rowspan="3"><ul class="simple">
<li><p>max_mem_mb</p></li>
</ul>
</td>
<td colspan="2"><p><em>Max Mem Mb</em></p></td>
</tr>
<tr class="row-odd"><td colspan="2"><p>The maximum amount of memory that can be requests, in megabytes.</p></td>
</tr>
<tr class="row-even"><td><p>type</p></td>
<td><p><em>integer</em></p></td>
</tr>
<tr class="row-odd"><td rowspan="4"><ul class="simple">
<li><p>time_start</p></li>
</ul>
</td>
<td colspan="2"><p><em>Time Start</em></p></td>
</tr>
<tr class="row-odd"><td colspan="2"><p>Date and time at which the workflow starts. This creates a unique id for the run.</p></td>
<tr class="row-even"><td colspan="2"><p>Date and time at which the workflow starts. This creates a unique id for the run.</p></td>
</tr>
<tr class="row-even"><td><p>type</p></td>
<tr class="row-odd"><td><p>type</p></td>
<td><p><em>string</em></p></td>
</tr>
<tr class="row-odd"><td><p>default</p></td>
<td><p>20241003152633</p></td>
<tr class="row-even"><td><p>default</p></td>
<td><p>20241003203202</p></td>
</tr>
</tbody>
</table>
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