Merge pull request #279 from NCI-CGR/update-README

Update readme
NCI-CGR · Apr 30, 2024 · efa3ba8 · efa3ba8
2 parents 1dd8ed6 + e300443
commit efa3ba8
Showing 1 changed file with 6 additions and 10 deletions.
diff --git a/README.md b/README.md
@@ -41,10 +41,10 @@ docker run -v $(pwd):/home/data -i -t gwas_qc_pipe snakemake -k --use-conda -npr
 # Installing GwasQcPipeline on ccad2
 - Install miniconda and then create GwasQcPipeline production environment
 ```
-$ mkdir /scratch/myfolder/GwasQcPipeline_v1.2
-$ cd /scratch/myfolder/GwasQcPipeline_v1.2
+$ mkdir /scratch/myfolder/GwasQcPipeline_v1.4.0
+$ cd /scratch/myfolder/GwasQcPipeline_v1.4.0
 $ wget https://repo.anaconda.com/miniconda/Miniconda3-py39_4.12.0-Linux-x86_64.sh
-$ bash Miniconda3-py39_4.12.0-Linux-x86_64.sh -p /scratch/myfolder/GwasQcPipeline_v1.2/conda -b
+$ bash Miniconda3-py39_4.12.0-Linux-x86_64.sh -p /scratch/myfolder/GwasQcPipeline_v1.4.0/conda -b
 $ source conda/bin/activate base
 (base) $ conda update -n base -c defaults conda
 (base) $ conda install -n base -c conda-forge mamba
@@ -53,15 +53,11 @@ $ source conda/bin/activate base
 ```
 - Install GwasQcPipeline source code
 ```
-$ source /scratch/myfolder/GwasQcPipeline_v1.2/conda/bin/activate GwasQcPipeline 
-(GwasQcPipeline) $ pip install https://github.com/NCI-CGR/GwasQcPipeline/releases/download/v1.2.0/cgr_gwas_qc-1.2.0-py3-none-any.whl
+$ source /scratch/myfolder/GwasQcPipeline_v1.4.0/conda/bin/activate GwasQcPipeline 
+(GwasQcPipeline) $ pip install https://github.com/NCI-CGR/GwasQcPipeline/releases/download/v1.4.0/cgr_gwas_qc-1.4.0-py3-none-any.whl
 (GwasQcPipeline) $ cgr --help
 (GwasQcPipeline) $ cgr version
-v1.2.0
+v1.4.0
 ```
 ## Usage
 ```cgr submit --ccad2 --local-mem-mb 8000```
-
-### LOG v1.2.0
-- add ccad2-slurm profile
-