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bugfix: Convert missing ancestry to Other category for grafpop output (Issue 326) #331

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merged 2 commits into from
Sep 26, 2024

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This PR fixes the issue of missing plots for the samples with missing ancestry. The grafpop outputted blank ancestry have been converted to "Other" category which is reflected in the sample_qc table, subject_qc table, PCA plots (> 50 samples), and HWE plots.

Fixes #326

Caryn Willis and others added 2 commits September 26, 2024 17:00
bugfix: Convert missing ancestry to Other category for grafpop output (Issue 326)
@carynwillis carynwillis merged commit 910ae33 into default Sep 26, 2024
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@carynwillis carynwillis changed the title feat: Improve handling of unexpected replicates (issue 269) bugfix: Convert missing ancestry to Other category for grafpop output (Issue 326) Sep 26, 2024
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"Other" ancestry missing from qc tables
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