v1.0.0

<a name"1.0.0">

1.0.0 (2016-05-16)

Bug Fixes

• 508: 2297 alt text on cbio logo (5576c227, closes PGDC-2297)
• app:
  • use auth endpoint for download links (e941a310)
  • 508 fixes across site (f7f6811a, closes PGDC-2390)
  • 2348 cbio icon style (31b13ebf, closes PGDC-2348)
  • 2330 allow dots in search (0e3286b5, closes PGDC-2330)
  • 2307 scroll top unless has tabs (4228cc62, closes PGDC-2307)
  • update link to data-transfer tool (1898606d)
• cart:
  • remove table export from cart (9b1ffb17, closes PGDC-2377)
  • 2404 cart required fields with filters (cee197a8, closes PGDC-2404)
  • 2372 hide sra/xml dl option (7e4a1b85, closes PGDC-2372)
  • 2237 disable add files btn if no files (42049ebd, closes PGDC-2237)
• components:
  • reduce spacing in bio tree (54365415)
  • 2362 check message key in resp (36a0162e, closes PGDC-2362)
• file:
  • 2333 remove metadata files section (70c5cdf8, closes PGDC-2333)
  • 2265 analysis query, table links (cfacb09c, closes PGDC-2265)
• files: 2378 case/project/access in ds analys (65b0d9ba, closes PGDC-2378)
• formatting: 2303 displays clinical data as-is (24a34246, closes PGDC-2303, PGDC-2322, PGDC-2352)
• home:
  • fix cases icon in summary (9feca7c6)
  • 2315 remove summary links (322e1a98, closes PGDC-2315)
  • 2306 sizing of bar chart header (c1cac1ad, closes PGDC-2306)
  • 2318 remove unique stat row (1e861be6, closes PGDC-2318)
  • fix GB -> TB RAM (d1e17822)
  • change project in example query (8cfdecdd)
• logging: removed download timeout warning. (72f9ecf3, closes PGDC-2298)
• markedBarChart: 2329 bold outline not darken (2c80ac9c, closes PGDC-2329)
• project:
  • 2187 2313 disable export on no data (949c584c, closes PGDC-2187, PGDC-2313)
  • 2295 table summing function (3ddab43c, closes PGDC-2295)
• projects:
  • 2341 move link to data query (864c908c, closes PGDC-2341)
  • 2345 fixes project list flash (ab45c42d, closes PGDC-2345)
• rangeFacet:
  • 2356 radios selected by default (f265f404, closes PGDC-2356)
  • 2398 change year conversion rules (4b8d29df, closes PGDC-2398)
• searchBar: 2311 make textarea resizable (2f9b8c33, closes PGDC-2311)
• style:
  • 2374 prevent table exceeding 100% (758f2a60)
  • 2374 smaller header in smaller width (a04fa81c)
• styles: use svg main logo (c9b8b0ea)

Features

• app:
  • 2338 link to analysis in nav (65f16232, closes PGDC-2338)
  • 2342 popup info for manifest dl btn (bf258629, closes PGDC-2342)
  • 2316 download all manifest button (aac38053, closes PGDC-2316)
  • 2342 url in link to cbio portal (cbacfbcf, closes PGDC-2343)
  • 2363 add home btn (4fd13d05, closes PGDC-2363)
• components: 2357 close modal btn (e62d103d, closes PGDC-2357)
• customFacets: 1858 filter empty checkbox (62bd0d03, closes PGDC-1858)
• downloader: 2347 improved waiting message (3147fc58, closes PGDC-2347)
• facets: 2351 style custom facet list (f37e84be, closes PGDC-2351)
• format: 2396 '365 days' rounds up to a year (37992e95, closes PGDC-2396)
• header: 2400 change / style nav icons (3cd8f55a, closes PGDC-2400)
• query: 2344 style fixes adv search dropdown (61fbbabb, closes PGDC-2344)

v0.3.24.3

<a name"0.3.24.3">

0.3.24.3 (2016-04-29)

Bug Fixes

• annotation:
  • add tooltip to project_id (cf2c32a8, closes PGDC-2066)
  • remove annotator (d07075d6, closes PGDC-2106)
• app:
  • 2201 data_category > summary cards (e59ffa2f, closes PGDC-2201)
  • 2073 hide git links in footer (cb15d763, closes PGDC-2073)
  • 2095 round mb to 2 decimal places (539b686d, closes PGDC-2095)
  • don't use expand whenever possible (3afc1934, closes PGDC-2023)
• bam: 1888 error handling tweaks (e7f2d13e, closes PGDC-1888)
• biospecimen: 2239 add title to search input (364d1a60, closes PGDC-2239)
• cart:
  • 2113 dont clobber project ids (30b610a3, closes PGDC-2113)
  • 2222 no undefined in notifications (ca6efd95, closes PGDC-2222)
  • 2161 download metadata_files (b614f352, closes PGDC-2161)
  • gather files in click handler (4466c959)
  • 2063 add all files off by one bug (bdb0f455, closes PGDC-2063)
  • 1952 update cart limit warning (ca3bb8a8, closes PGDC-1952)
  • 'No Files' when no files (4f6053de, closes PGDC-1981)
  • check for controlled files on click (8de8c587, closes PGDC-2086)
• case:
  • 2199 better display for clinical data (31ed1ecb, closes PGDC-2199)
  • 2134 minor issues in case entity (1facc757, closes PGDC-2134)
• chart: make barchart labels more readable (38543a39, closes PGDC-2042)
• charts: remove undefined fn call (5356b82e, closes PGDC-2197)
• chore: 2163 null-safety when calling #some (05d4462e, closes PGDC-2163)
• components:
  • 2181 don't humanify fields (48276153, closes PGDC-2181)
  • add track by for facetConfig (ac275683)
  • handle empty fields in gql/facets (1078fae0, closes PGDC-2126, PGDC-2124)
  • if blacklist exists then filter (b863ba49)
  • 2067 remove GO btn from prefix (32e75c52, closes PGDC-2067)
• css: 2150 gdc-app menu layout issue in IE (3056b212, closes PGDC-2150)
• download: 2056 displays progress in button (b031a942, closes PGDC-2056)
• entity:
  • 2136 displays treatments (8bc81964, closes PGDC-2136)
  • 2039 double dash when id is null (a4c62b39, closes PGDC-2039)
• exportTable: 2220 include case_id (b26021b6, closes PGDC-2220)
• facet:
  • 2171 custom facet not added in IE (9596437d, closes PGDC-2171)
  • ignored missing in facets (26920a00, closes PGDC-2069)
• file:
  • 2198 displays file data as is (636716eb, closes PGDC-2198)
  • 2140 remove date fields from table (fc69f838, closes PGDC-2140)
• gdctable: never mutate config.headings (fdb72e08, closes PGDC-1769)
• git: 2241 reinstated commit info (a17f9707, closes PGDC-2241)
• githut:
  • 2164 link add data_category filter (9a797c38, closes PGDC-2164)
  • handle NaN values (75d5cdba)
• gql: autocomplete with all OP by default (416045b3, closes PGDC-2195)
• header:
  • 2224 remove reports link (b04663c6, closes PGDC-2224)
  • use flexbox for gdc-apps-menu (e402b168, closes PGDC-1933)
• home:
  • update infra numbers (8445c804, closes PGDC-2234)
  • 2178 adjust queries (1dffaf61, closes PGDC-2178)
• login:
  • 2221 retain my-project toggle state (b373a26e, closes PGDC-2221)
  • 2151 login not shown in IE (ff5edebb, closes PGDC-2151)
• projects: 2172 missing line in facet section (a69d1666, closes PGDC-2172)
• reports:
  • 2098 hide data category (fefb57d4, closes PGDC-2098)
  • 2173 remove export btn (0d3a0205, closes PGDC-2173)
  • 2137 handle no reports (ad2d4d2c, closes PGDC-2137)
• search:
  • remove file state from default facets (311e764b, closes PGDC-2208)
  • 2177 ICD-10 to Primary Diagnoses (8e0cfba8, closes PGDC-2177)
  • fix pagination not updating (45ffbbfb, closes PGDC-2185)
  • pass expands fields to query (1c4919c7)
  • all facets open by default (d34f69f6, closes PGDC-2061)
• table: 2229 update table column layout (f70b9485, closes PGDC-2229)
• **table...

v0.3.24.2

<a name"0.3.24.2">

0.3.24.2 (2016-04-04)

Bug Fixes

• app:
  • favicon shows up on ie11 (3a6bd7ae, closes PGDC-1948)
  • put login() back in appRun (699513e5)
  • correct spinner show/hide (fdce0079)
  • handle stale tokens (657e11cf, closes PGDC-23)
  • handle no results in ui (93db2b93, closes PGDC-1841)
• cart:
  • size check for add single file (5c77bc99, closes PGDC-1957)
  • fix charts (0a92e463)
  • faster loading (8eacc2e0, closes PGDC-1956)
  • remove unnecessary call to summary (f48cb16d, closes PGDC-1947)
• case: blanks as '--' always (476143f8, closes PGDC-1927)
• charts: display icon colour in ie11 (fa0ee350, closes PGDC-1953)
• components: format facet date in filters (9e9243d2)
• download:
  • use iframe for downloads (9b2b5fa6, closes PGDC-1772)
  • api expecting csv not array (0830c633)
  • pass download function (5dddfe50, closes PGDC-1915)
• graphs: Githut and Home Page fixes (ceefcdb1, closes PGDC-117)
• header: tabindex issues (30b5d147, closes PGDC-1803)
• home:
  • use leap year in yearToDay (f8a1b279, closes PGDC-1974)
  • add TH (28285989, closes PGDC-1933)
  • 508, remove hidden section (776cce4a, closes PGDC-1801)
• index: add href on anchor (9b67d53e, closes PGDC-1939)
• participant: ageDisplay for diagnoses (7801e243, closes PGDC-1842)
• projects: total links - include project_ids (8ace1e99, closes PGDC-1913)
• query:
  • do not refresh when paging (3bbfac78)
  • fix cases table pagination settings (0ac5208f, closes PGDC-1955)
  • handle search with empty query (fd28fabf, closes PGDC-1787)
• search:
  • get min age_at_diagnosis (0e7870a0, closes PGDC-911)
  • leave facet link active (e08fa2be, closes PGDC-1897)
  • fixes project charts on Adv. Search (a57b7aeb, closes PGDC-1900)

Features

• app:
  • loading spinners main views (5efd8893)
  • tooltips where class=truncated-cell (5c9512e0, closes PGDC-808)
• components: transition to tab from table (cd8e5e61, closes PGDC-1839)
• facets: submitter_id facet free search (7c05815d, closes PGDC-1869, PGDC-1908)
• gql: add date support to gql (e306bfbf, closes PGDC-719)
• home: Modify Bar Chart (4dbd8532, closes PGDC-1909)

v0.3.24.4-rc1

0.3.24.2-rc1 (2016-03-28)

Bug Fixes

• app: more uib fixes (aa2eec61, closes PGDC-1762)
• cart:
  • fix project chart (b1e269a0)
  • remove and undo updates properly (b9266983, closes PGDC-1857)
  • change removeAll to POST (36993573, closes PGDC-912)
  • 508 on remove from cart button (b82d698a, closes PGDC-931)
• components:
  • conditionally show case column (31876aff)
  • touchup prefix search (168085b6, closes PGDC-1866, PGDC-1869)
  • file size in summary_card (252ae45c)
  • use correct font in dropdown (29610b4f)
  • uib- prefix for nav collapse (9194eecd)
  • use new auth directive (ce96e6ea, closes PGDC-1819)
  • fix missing entity (doctype) (3e93a302)
• download: send ids for form post (475ee1cc, closes PGDC-1861)
• facets:
  • label for date input (7e0db0bb, closes PGDC-482)
  • range facet input bug (f1237778, closes PGDC-1794)
• file:
  • line between top buttons (76e62a5d, closes PGDC-620)
  • metadata, remove link and add to chart (56007c78, closes PGDC-1465)
  • keep tag, data submitter (842970d9, closes PGDC-1465)
• filter: return default if null (fb992694, closes PGDC-596)
• githut-graph: Robustly handle bad data (c863115c, closes PGDC-1042)
• search: field name typos (a7de75ea, closes PGDC-1878)
• style: modal z-above searchbar (0ddcae4d)
• summaryCards: header for col1 (a450ac2a, closes PGDC-807)

Features

• 621: show case_count in summary table (cbce3a73, closes PGDC-621)
• advanced-search: Change Search Button Names (286fc9fd, closes PGDC-1359)
• app:
  • add favicon (48cfba96, closes PGDC-824)
  • project & case entity page updates (37f53efc, closes PGDC-1743)
  • open new tab (e5a176ed, closes PGDC-753)
• auth: login/logout through popup (b7f3a3c7, closes PGDC-633)
• bam: allow tab, add examples (39d7ccb2, closes PGDC-163)
• cart:
  • metadata files DL cart, remove counts (aa5f8189, closes PGDC-1469)
  • download metadata (3c2a2dcd, closes PGDC-1800)
  • Redesign Download buttons (1e907b1f, closes PGDC-1783)
  • only store ids & size, access (fc6def88, closes PGDC-1463)
• case: link project id (a9838ed9, closes PGDC-688)
• clinical: updated case entity page (438dd4e7, closes PGDC-1464, PGDC-1653)
• components: consolidate cart actions (149346b2, closes PGDC-1469)
• download:
  • cart downloads via post (f5980a3f, closes PGDC-1047)
  • improved download experience (f150457e, closes PGDC-822)
• entity:
  • search & highlight biospecimen tree (9224e4b7, closes PGDC-812)
  • expand/collapse all biospecimen tree (4bffa19d, closes PGDC-812)
• export: download clinical & biospec (f3c382ba, closes PGDC-1466)
• facets: search on description & highlight (7d85eb0a, closes PGDC-1462)
• file: common changes for index update (ecd393c6, closes PGDC-1465)
• file-entity: File Entity Page Changes (c359bb6e)
• gql:
  • filter operators by field type (5d5eafb2, closes PGDC-1195)
  • highlight query match (9c940bf3, closes PGDC-1461, PGDC-1045)
  • update and improve GQL UX (b66690ba, closes PGDC-639, PGDC-750, PGDC-114, PGDC-375)
• home:
  • Home page feedback changes from demo (af0b23df)
  • Change Home Advanced Queries (3a4f7386, closes PGDC-1885)
  • Update Home Page (9c52f243, closes PGDC-1825)
  • Add download stats (75cf3f85)
• projects:
  • update to use data categories (e77d3da0, closes PGDC-1755)
  • Project links & minor home updates (7d748895, closes PGDC-738, PGDC-1359)
• search:
  • facets/table changes for new index (4e4bd9b6, closes PGDC-1757)
  • can search with prefix wildcard (350fcce3, closes PGDC-631)
  • add custom facet support (b7a93b9a, closes PGDC-714)

v0.2.18

<a name"0.2.18">

0.2.18 (2015-12-15)

Bug Fixes

• files: seperate directives for dl & slicing (d6c4dde6)
• search: disease_type doesn't autofilter (21ed658e, closes OICR-1206)

Features

• file: bam slicing ui (18177049, closes OICR-1432)

v0.2.18-spr3

<a name"0.2.18-spr3">

0.2.18-spr3 (2015-11-25)

Bug Fixes

• files: seperate directives for dl & slicing (d6c4dde6)
• search: disease_type doesn't autofilter (21ed658e, closes OICR-1206)

Features

• file: bam slicing ui (18177049, closes OICR-1432)

v0.2.15

<a name"0.2.15">

0.2.15 (2015-09-30)

Bug Fixes

• UserService:
  • set unauthed user from cookie (1773393c, closes OICR-1174)
  • isUserProject works again (72dbf4af, closes OICR-1101)
• annotations: no autocomplete for entity/case (ae7ff66d, closes OICR-1102)
• app:
  • no startsWith (9216550a, closes OICR-1122, OICR-1125, OICR-1127)
  • correct csrf header (07a57e93)
• cart:
  • fixes summary case count (9789abfe, closes OICR-1183)
  • table column alignments (3f64a247, closes OICR-1093)
  • fixes case/annotation links (ccd24b88, closes OICR-1181)
  • update gdc-client help text (06cf7493, closes OICR-1130)
  • return all files in manifest (2b86128e, closes OICR-1120)
  • button alignment (4c9675aa, closes OICR-1106)
• case:
  • missed name->field rename (dfb93e4d)
  • adds taget=_blank to xml links (20831279, closes OICR-1138, OICR-1124)
• facets: expand date input (86c81f11, closes OICR-1077)
• facetsFreeText: do nothing if empty term (c1b8b531, closes OICR-1053)
• githut: no neg rect widths (41238931, closes OICR-1006)
• header: hide MyProjects btn when 0 projects (b74c7b9b)
• notify: add word-break for long filenames (a0165001, closes OICR-1123)
• pagination: toJson before setting (b6de0f76, closes OICR-1184)
• paging: set pg to 1 when facet added/removed (60c233b6, closes OICR-1129)
• project: 0 case fixes (8cc13595, closes OICR-1128)
• projects:
  • fixes links to search tabs (805ba74a, closes OICR-1187)
  • missed name->field rename (48b7c956)
• rangeFacets:
  • show default selected input (877ad596)
  • use ng-click not ng-change (95f049a6)
• reports: remove * 1e6 (b7facccd, closes OICR-1207)
• search:
  • added aria-label attributes (65a74a98, closes OICR-1134, OICR-1133, OICR-1136)
  • missed name->field rename (8ff104a5)
• search.cases: correctly check my projects (f91a9d7b, closes OICR-1165)
• table:
  • revert table sum row (f8aca3d0)
  • right align table headers (28e40b57, closes OICR-1093)
  • fixes column filtering (266709b6, closes OICR-1092)
• user: don't use newuser cookie on 401 (edc7880b, closes OICR-1189)

Features

• app: send x-csrf-token with every post (6508e77c, closes OICR-1103)
• cart:
  • spinner stops on fail, alerts user (797d84cb, closes OICR-1182)
  • download btn in cart has spinning indicator (0eac1155)
• core:
  • show unsupported browser warning (b29ef335, closes OICR-1065)
  • display login failed warning (eb92352f, closes OICR-1069)
• doc: Add instruction for git template (23764759)
• facet-free-text: drop down no results (94f3ddfb, closes OICR-1050)
• files: spinning indication on download buttons (ec2c623e)
• projects: adds a totals row (e2e53fe8, closes OICR-1132)
• query-summary: display tooltip warnings (aeee09c9, closes OICR-1070)
• reports:
  • export btn is independent template (d22020f6)
  • oicr-1020 minor UI changes (3a254662)
• search: copy change in autocomplete (0337963b)

v0.2.15-spr3

<a name"0.2.15-spr3">

0.2.15-spr3 (2015-09-30)

Bug Fixes

• pagination: toJson before setting (b6de0f76, closes OICR-1184)
• reports: remove * 1e6 (b7facccd, closes OICR-1207)
• search: added aria-label attributes (65a74a98, closes OICR-1134, OICR-1133, OICR-1136)
• user: don't use newuser cookie on 401 (edc7880b, closes OICR-1189)

v0.2.15-spr2

<a name"0.2.15-spr2">

0.2.15-spr2 (2015-08-31)

Bug Fixes

• UserService: set unauthed user from cookie (1773393c, closes OICR-1174)
• cart:
  • fixes summary case count (9789abfe, closes OICR-1183)
  • table column alignments (3f64a247, closes OICR-1093)
  • fixes case/annotation links (ccd24b88, closes OICR-1181)
• case: missed name->field rename (dfb93e4d)
• header: hide MyProjects btn when 0 projects (b74c7b9b)
• projects:
  • fixes links to search tabs (805ba74a, closes OICR-1187)
  • missed name->field rename (48b7c956)
• search: missed name->field rename (8ff104a5)
• search.cases: correctly check my projects (f91a9d7b, closes OICR-1165)
• table: revert table sum row (f8aca3d0)

Features

• cart:
  • spinner stops on fail, alerts user (797d84cb, closes OICR-1182)
  • download btn in cart has spinning indicator (0eac1155)
• files: spinning indication on download buttons (ec2c623e)
• reports:
  • export btn is independent template (d22020f6)
  • oicr-1020 minor UI changes (3a254662)
• search: copy change in autocomplete (0337963b)

v0.2.15-spr1

<a name"0.2.15-spr1">

0.2.15-spr1 (2015-08-07)

Bug Fixes

• UserService: isUserProject works again (72dbf4af, closes OICR-1101)
• annotations: no autocomplete for entity/case (ae7ff66d, closes OICR-1102)
• app:
  • no startsWith (9216550a, closes OICR-1122, OICR-1125, OICR-1127)
  • correct csrf header (07a57e93)
• cart:
  • update gdc-client help text (06cf7493, closes OICR-1130)
  • return all files in manifest (2b86128e, closes OICR-1120)
  • button alignment (4c9675aa, closes OICR-1106)
• case: adds taget=_blank to xml links (20831279, closes OICR-1138, OICR-1124)
• facets: expand date input (86c81f11, closes OICR-1077)
• facetsFreeText: do nothing if empty term (c1b8b531, closes OICR-1053)
• githut: no neg rect widths (41238931, closes OICR-1006)
• notify: add word-break for long filenames (a0165001, closes OICR-1123)
• paging: set pg to 1 when facet added/removed (60c233b6, closes OICR-1129)
• project: 0 case fixes (8cc13595, closes OICR-1128)
• rangeFacets:
  • show default selected input (877ad596)
  • use ng-click not ng-change (95f049a6)
• table:
  • right align table headers (28e40b57, closes OICR-1093)
  • fixes column filtering (266709b6, closes OICR-1092)

Features

• app: send x-csrf-token with every post (6508e77c, closes OICR-1103)
• core:
  • show unsupported browser warning (b29ef335, closes OICR-1065)
  • display login failed warning (eb92352f, closes OICR-1069)
• doc: Add instruction for git template (23764759)
• facet-free-text: drop down no results (94f3ddfb, closes OICR-1050)
• projects: adds a totals row (e2e53fe8, closes OICR-1132)
• query-summary: display tooltip warnings (aeee09c9, closes OICR-1070)