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Updated some hotlinks and typos in AWS readme -AO
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Olvera-Morales committed Oct 1, 2024
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Expand Up @@ -58,11 +58,11 @@ Included is a tutorial in the form of Jupyter notebooks. The main purpose of the

**1)** Follow the steps highlighted [here](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateAWSSagemakerNotebooks.md) to create a new fully managed notebook in Amazon SageMaker. Follow steps and be especially careful to enable idle shutdown as highlighted. For this module, in [step 4](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateAWSSagemakerNotebooks.md#:~:text=Give%20a%20name%20to%20your%20notebook.%20Choose%20a%20notebook%20instance%20type%20based%20on%20needs%2C%20Amazon%20Linux%202%20as%20platform%20identifier%2C%20volume.%20Optional%2C%20create%20idle%2Dshut%20by%20selecting%20create%20new%20lifecycle%20configuration%20and%20copy%20and%20paste%20idle%2Dshutdown.sh%20and%20create%20configuration.%20Then%20click%20Create%20notebook%20instance%3A) in the "Notebook instance type" tab, select ml.m5.xlarge from the dropdown box. Select conda_python3 kernel in [step 8](https://github.com/NIGMS/NIGMS-Sandbox/blob/AWS%26GCP/docs/HowToCreateAWSSagemakerNotebooks.md#:~:text=Select%20a%20notebook%20and%20then%20kernel%3A).

**2)** Now you will need to download the tutorial files from GitHub. The easiest way to do this would be to clone the repository from NIGMS into your SageMaker notebook. To clone this repository, use the `Git` command `git clone https://github.com/NIGMS/Introduction-to-Data-Science-for-Biology.git` in the terminal as it illustrated in [Step 9](https://github.com/NIGMS/NIGMS-Sandbox/blob/SageMakerTutorial/docs/HowToCreateAWSSagemakerNotebooks.md#:~:text=To%20clone%20in,see%20the%20repo). Please make sure you only enter the link for the repository that you want to clone. There are other bioinformatics related learning modules available in the [NIGMS Repository](https://github.com/NIGMS). This will download our tutorial files into a folder called `Introduction-to-Data-Science-for-Biology`.
**2)** Now you will need to download the tutorial files from GitHub. The easiest way to do this would be to clone the repository from NIGMS into your SageMaker notebook. To clone this repository, use the `Git` command `git clone https://github.com/NIGMS/Introduction-to-Data-Science-for-Biology.git` in the terminal as it illustrated in [step 9](https://github.com/NIGMS/NIGMS-Sandbox/blob/SageMakerTutorial/docs/HowToCreateAWSSagemakerNotebooks.md#:~:text=To%20clone%20in,see%20the%20repo). Please make sure you only enter the link for the repository that you want to clone. There are other bioinformatics related learning modules available in the [NIGMS Repository](https://github.com/NIGMS). This will download our tutorial files into a folder called `Introduction-to-Data-Science-for-Biology`.

**IMPORTANT NOTE**

Make sure that after you are done with the module, close the tab that appeared when you clicked **OPEN JUPYTERLAB**, then check the box next to the name of the notebook you created in step 3. Then click on **STOP** at the top of the Workbench menu. Wait and make sure that the icon next to your notebook is grayed out.
Make sure that after you are done with the module, close the tab that appeared when you clicked **OPEN JUPYTERLAB**, then check the box next to the name of the notebook you created in [step 3](https://github.com/NIGMS/NIGMS-Sandbox/blob/AWS%26GCP/docs/HowToCreateAWSSagemakerNotebooks.md#:~:text=Click%20Create%20notebook%20instance%3A). Then click on **STOP** at the top of the Workbench menu. Wait and make sure that the icon next to your notebook is grayed out.

## **Software Requirements**

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